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Os04g0679800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RNA-binding protein-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0189) R2 : 0.00475
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0588 (0.0399) R2dN8 : 0.00613 R2N8 : 0.00475
σ : 0.357
deviance : 58.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.86 0.289 10.9 -0.547 0.5 -0.129 -0.217 -2.25 -0.0476 17.5 24.97 1567 -- --
39.8 0.294 10.8 0.0418 0.513 -0.366 -0.271 -- 0.0821 17.6 25.24 3265 -- --
37.92 0.287 10.9 -0.521 0.519 -0.151 -- -2.29 -0.0409 17.5 25 1694 -- --
39.89 0.294 10.8 0.0616 0.498 -0.383 -- -- 0.0735 17.6 25.6 3268 -- --
50.61 0.331 10.9 -0.655 -- -0.0511 -- -2.74 -0.0859 -- 26.13 2751 -- --
44.4 0.312 10.8 -0.057 0.515 -- -0.182 -- 0.0641 17.4 -- -- -- --
44.48 0.312 10.8 -0.0565 0.514 -- -- -- 0.0633 17.4 -- -- -- --
51.76 0.335 10.8 0.0894 -- -0.371 -- -- 0.197 -- 32 11571 -- --
39.8 0.294 10.8 -- 0.505 -0.374 -- -- 0.0303 17.6 28.19 3259 -- --
58.25 0.357 10.8 -0.0739 -- -- -- -- 0.0506 -- -- -- -- --
44.56 0.312 10.8 -- 0.515 -- -- -- 0.0696 17.4 -- -- -- --
51.95 0.336 10.8 -- -- -0.357 -- -- 0.184 -- 31.8 11572 -- --
58.4 0.357 10.8 -- -- -- -- -- 0.0588 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.03 atmosphere 995.0 10 > th dose dependent rect. 6 21
8 35.05 radiation 40.0 270 < th dose independent rect. 4 21
9 35.08 atmosphere 1015.0 10 < th dose dependent rect. 12 18
11 35.12 radiation 40.0 10 < th dose dependent rect. 7 20
12 35.19 radiation 40.0 90 < th dose dependent rect. 6 21
15 35.25 atmosphere 1015.0 90 < th dose dependent rect. 11 19
26 35.40 atmosphere 1010.0 10 < th dose independent rect. 12 18
34 35.56 atmosphere 1015.0 270 < th dose dependent rect. 9 20
39 35.59 temperature 30.0 90 < th dose dependent rect. 6 19
42 35.63 atmosphere 1000.0 10 > th dose independent rect. 6 21
55 35.75 temperature 10.0 270 > th dose dependent rect. 9 11
58 35.77 atmosphere 1000.0 90 > th dose independent rect. 6 19
67 35.86 temperature 30.0 10 < th dose independent rect. 6 21
79 35.99 temperature 10.0 10 > th dose dependent rect. 12 18
97 36.10 temperature 10.0 720 > th dose dependent rect. 8 5
101 36.12 atmosphere 1010.0 270 < th dose independent rect. 9 20
120 36.18 radiation 40.0 10 < th dose dependent rect. 7 18
123 36.20 temperature 10.0 270 > th dose dependent rect. 9 20
128 36.24 radiation 40.0 270 < th dose dependent rect. 5 10
140 36.30 atmosphere 1000.0 10 > th dose independent rect. 6 6
164 36.40 radiation 40.0 270 < th dose independent rect. 5 10
181 36.46 temperature 30.0 90 < th dose independent rect. 6 19
188 36.47 atmosphere 995.0 270 > th dose dependent rect. 14 10
190 36.49 temperature 15.0 10 > th dose independent rect. 12 18
200 36.58 temperature 30.0 10 < th dose independent rect. 6 19
251 36.79 temperature 30.0 90 < th dose independent rect. 6 6
260 36.80 temperature 30.0 10 < th dose independent rect. 6 6
283 36.87 radiation 20.0 270 < th dose independent rect. 5 6
284 36.87 radiation 40.0 90 < th dose independent rect. 6 6
286 36.87 radiation 40.0 270 < th dose independent rect. 13 11
311 36.96 temperature 30.0 10 < th dose independent rect. 6 8
329 37.00 wind 1.0 270 > th dose independent rect. 1 3
338 37.03 temperature 20.0 270 > th dose independent rect. 9 11
343 37.04 radiation 30.0 10 < th dose independent rect. 7 18
348 37.05 temperature 30.0 270 < th dose dependent rect. 5 11
362 37.08 wind 7.0 270 < th dose independent rect. 24 14
372 37.12 humidity 70.0 90 > th dose independent rect. 6 21
425 37.25 atmosphere 995.0 10 > th dose dependent rect. 6 6
439 37.28 radiation 40.0 270 < th dose independent rect. 11 13
441 37.29 temperature 30.0 90 < th dose independent rect. 6 11
443 37.30 precipitation 0.1 270 < th dose independent rect. 1 3
444 37.30 wind 1.0 10 > th dose independent rect. 6 6
447 37.30 precipitation 0.1 270 < th dose dependent rect. 1 3
451 37.31 precipitation 0.1 10 < th dose independent rect. 12 18
453 37.31 precipitation 0.1 10 < th dose dependent rect. 12 18
461 37.33 humidity 70.0 90 > th dose independent rect. 6 19
462 37.34 temperature 25.0 1440 > th dose dependent rect. 10 3
465 37.35 wind 9.0 10 < th dose independent rect. 12 18
467 37.35 temperature 25.0 1440 > th dose dependent rect. 11 1
483 37.39 wind 7.0 270 < th dose independent rect. 1 3
485 37.39 temperature 10.0 10 > th dose independent rect. 6 6
488 37.39 atmosphere 1015.0 10 < th dose independent rect. 6 6
509 37.41 precipitation 0.1 270 < th dose independent rect. 4 21
512 37.41 precipitation 0.1 270 < th dose dependent rect. 4 21
517 37.43 precipitation 0.1 10 < th dose independent rect. 6 6
519 37.43 humidity 70.0 270 > th dose independent rect. 4 21
522 37.43 precipitation 0.1 10 < th dose dependent rect. 6 6
525 37.44 temperature 25.0 1440 > th dose independent rect. 5 6
531 37.45 temperature 10.0 270 > th dose independent rect. 1 3
533 37.45 temperature 30.0 270 < th dose independent rect. 1 3
534 37.45 humidity 50.0 270 > th dose independent rect. 1 3
537 37.45 atmosphere 995.0 270 > th dose independent rect. 1 3
538 37.45 atmosphere 1010.0 270 < th dose independent rect. 1 3
540 37.45 radiation 1.0 270 < th dose independent rect. 1 3
548 37.45 temperature 10.0 270 > th dose independent rect. 4 21
550 37.45 radiation 1.0 270 < th dose dependent rect. 1 3
562 37.47 precipitation 0.1 10 < th dose independent rect. 3 3
566 37.47 precipitation 0.1 10 < th dose dependent rect. 3 3
573 37.48 wind 9.0 30 < th dose dependent rect. 3 3
598 37.52 temperature 25.0 1440 < th dose independent rect. 5 6
600 37.52 precipitation 0.1 270 < th dose independent rect. 1 13
605 37.52 precipitation 0.1 270 < th dose dependent rect. 1 13
609 37.53 wind 9.0 10 < th dose independent rect. 6 6
619 37.54 radiation 40.0 270 < th dose independent rect. 20 14
627 37.55 temperature 25.0 1440 > th dose dependent rect. 2 11
633 37.56 wind 5.0 10 < th dose independent rect. 3 3
636 37.56 temperature 10.0 1440 > th dose independent rect. 7 6
639 37.56 atmosphere 995.0 1440 > th dose independent rect. 7 6
641 37.56 temperature 10.0 1440 > th dose independent rect. 13 18
654 37.57 temperature 25.0 1440 > th dose dependent rect. 5 8
679 37.60 temperature 10.0 10 > th dose independent rect. 3 3
681 37.60 temperature 30.0 10 < th dose independent rect. 3 3
682 37.60 humidity 50.0 10 > th dose independent rect. 3 3
685 37.60 atmosphere 995.0 10 > th dose independent rect. 3 3
686 37.60 atmosphere 1010.0 10 < th dose independent rect. 3 3
688 37.60 radiation 20.0 10 < th dose independent rect. 3 3
693 37.60 temperature 10.0 10 > th dose independent rect. 6 21
703 37.61 wind 1.0 270 > th dose independent rect. 4 21
714 37.62 precipitation 0.1 90 < th dose independent rect. 1 5
719 37.62 precipitation 0.1 90 < th dose dependent rect. 1 5
720 37.62 temperature 25.0 1440 > th dose dependent rect. 3 13
744 37.63 temperature 25.0 1440 > th dose dependent sin 3 NA
746 37.63 humidity 50.0 270 > th dose dependent rect. 1 3
748 37.63 humidity 50.0 90 > th dose dependent rect. 1 5
764 37.64 radiation 40.0 10 < th dose dependent rect. 3 3
798 37.66 temperature 10.0 270 > th dose dependent rect. 1 13
807 37.67 precipitation 0.1 30 < th dose independent rect. 6 21
817 37.67 atmosphere 995.0 10 > th dose dependent rect. 15 12
828 37.67 precipitation 0.1 30 < th dose dependent rect. 6 21
837 37.68 radiation 10.0 90 < th dose dependent rect. 3 3
848 37.70 wind 5.0 90 < th dose independent rect. 1 5
851 37.70 temperature 10.0 90 > th dose independent rect. 1 5
853 37.70 temperature 30.0 90 < th dose independent rect. 1 5
854 37.70 humidity 50.0 90 > th dose independent rect. 1 5
857 37.70 atmosphere 995.0 90 > th dose independent rect. 1 5
858 37.70 atmosphere 1010.0 90 < th dose independent rect. 1 5
860 37.70 radiation 20.0 90 < th dose independent rect. 1 5
864 37.70 temperature 10.0 90 > th dose independent rect. 6 19
897 37.72 precipitation 0.1 90 < th dose independent rect. 6 19
907 37.72 precipitation 0.1 90 < th dose dependent rect. 6 19
913 37.73 radiation 40.0 90 < th dose dependent rect. 1 5
926 37.74 temperature 10.0 10 > th dose dependent rect. 12 11
934 37.75 precipitation 0.1 270 < th dose independent rect. 14 10
935 37.75 humidity 50.0 270 > th dose independent rect. 24 14
940 37.75 precipitation 0.1 270 < th dose dependent rect. 14 10
951 37.76 temperature 30.0 270 < th dose independent rect. 4 8
955 37.76 humidity 50.0 10 > th dose dependent rect. 3 3
958 37.76 wind 9.0 90 < th dose dependent rect. 1 5
972 37.77 atmosphere 995.0 90 > th dose dependent rect. 13 23