Os07g0275300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os07g0275300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.46 | 0.268 | 9.59 | 0.232 | 0.504 | 0.271 | -0.451 | -0.369 | -0.0595 | 10.1 | 19.94 | 10 | -- | -- |
| 32.74 | 0.267 | 9.59 | 0.238 | 0.504 | 0.256 | -0.132 | -- | -0.0504 | 10.1 | 18.35 | 9 | -- | -- |
| 32.75 | 0.267 | 9.6 | 0.241 | 0.516 | 0.276 | -- | -0.125 | -0.0698 | 10.2 | 18.35 | 9 | -- | -- |
| 32.76 | 0.267 | 9.59 | 0.242 | 0.523 | 0.281 | -- | -- | -0.058 | 10.2 | 18.2 | 9 | -- | -- |
| 39.45 | 0.293 | 9.57 | 0.319 | -- | 0.127 | -- | -0.399 | -0.0449 | -- | 40.53 | 901 | -- | -- |
| 35.55 | 0.28 | 9.59 | 0.241 | 0.344 | -- | -0.224 | -- | -0.0509 | 8.73 | -- | -- | -- | -- |
| 35.72 | 0.28 | 9.59 | 0.234 | 0.345 | -- | -- | -- | -0.0509 | 8.76 | -- | -- | -- | -- |
| 39.51 | 0.293 | 9.61 | 0.365 | -- | 0.18 | -- | -- | -0.0153 | -- | 40.46 | 929 | -- | -- |
| 34.39 | 0.273 | 9.6 | -- | 0.52 | 0.269 | -- | -- | -0.08 | 10.1 | 18.35 | 9 | -- | -- |
| 42.45 | 0.304 | 9.6 | 0.235 | -- | -- | -- | -- | -0.0482 | -- | -- | -- | -- | -- |
| 37.16 | 0.285 | 9.6 | -- | 0.345 | -- | -- | -- | -0.0769 | 8.71 | -- | -- | -- | -- |
| 40.7 | 0.297 | 9.6 | -- | -- | 0.204 | -- | -- | -0.0085 | -- | 37.89 | 875 | -- | -- |
| 43.9 | 0.309 | 9.61 | -- | -- | -- | -- | -- | -0.0742 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.97 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 4 | 30.42 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 5 | 30.44 | temperature | 25.0 | 10 | > th | dose independent | rect. | 1 | 8 |
| 8 | 30.55 | temperature | 25.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 11 | 30.75 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 15 | 30.88 | humidity | 90.0 | 10 | < th | dose independent | rect. | 24 | 9 |
| 16 | 30.96 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 21 |
| 29 | 31.18 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 30 | 31.18 | wind | 1.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 35 | 31.26 | radiation | 20.0 | 90 | < th | dose independent | rect. | 15 | 19 |
| 37 | 31.27 | radiation | 10.0 | 30 | > th | dose independent | rect. | 9 | 8 |
| 46 | 31.39 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 16 |
| 66 | 31.50 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 6 | 12 |
| 83 | 31.61 | radiation | 20.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 85 | 31.61 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 24 | 9 |
| 88 | 31.63 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 98 | 31.66 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 5 |
| 100 | 31.67 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 101 | 31.68 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 103 | 31.68 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 111 | 31.72 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 12 |
| 121 | 31.75 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 131 | 31.77 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 136 | 31.79 | radiation | 20.0 | 10 | < th | dose independent | rect. | 13 | 22 |
| 142 | 31.80 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 5 | 5 |
| 144 | 31.80 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 157 | 31.86 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 158 | 31.86 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 6 | 5 |
| 176 | 31.92 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 14 |
| 178 | 31.92 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 181 | 31.92 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 191 | 31.95 | radiation | 1.0 | 30 | > th | dose independent | rect. | 17 | 16 |
| 203 | 31.97 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 234 | 32.01 | wind | 1.0 | 90 | > th | dose independent | rect. | 4 | 17 |
| 235 | 32.01 | humidity | 50.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 238 | 32.01 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 250 | 32.05 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 4 |
| 302 | 32.11 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 305 | 32.11 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 306 | 32.11 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 307 | 32.11 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 331 | 32.14 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 19 |
| 335 | 32.15 | radiation | 20.0 | 10 | < th | dose independent | rect. | 17 | 18 |
| 387 | 32.22 | radiation | 20.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 388 | 32.22 | radiation | 20.0 | 10 | < th | dose independent | rect. | 19 | 23 |
| 390 | 32.22 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 391 | 32.23 | radiation | 1.0 | 90 | > th | dose independent | sin | 11 | NA |
| 392 | 32.23 | radiation | 1.0 | 90 | < th | dose independent | sin | 11 | NA |
| 404 | 32.24 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 408 | 32.24 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 20 | 9 |
| 414 | 32.25 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 417 | 32.25 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 421 | 32.25 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 423 | 32.25 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 424 | 32.25 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 436 | 32.25 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 451 | 32.26 | radiation | 1.0 | 90 | < th | dose dependent | sin | 11 | NA |
| 457 | 32.27 | humidity | 60.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 479 | 32.29 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 488 | 32.30 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 490 | 32.30 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 14 |
| 497 | 32.30 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 18 | 10 |
| 499 | 32.30 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 532 | 32.34 | radiation | 10.0 | 30 | < th | dose independent | sin | 22 | NA |
| 544 | 32.34 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 15 | 19 |
| 548 | 32.35 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 549 | 32.35 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 554 | 32.35 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 14 |
| 555 | 32.35 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 14 |
| 575 | 32.37 | humidity | 90.0 | 720 | > th | dose independent | rect. | 24 | 2 |
| 581 | 32.37 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 14 |
| 620 | 32.38 | radiation | 20.0 | 10 | < th | dose independent | rect. | 4 | 23 |
| 631 | 32.39 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 9 | 10 |
| 654 | 32.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 655 | 32.41 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 676 | 32.43 | radiation | 30.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 679 | 32.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 10 |
| 690 | 32.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 10 |
| 698 | 32.44 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 704 | 32.44 | radiation | 20.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 727 | 32.46 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 730 | 32.46 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 734 | 32.47 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 735 | 32.47 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 755 | 32.48 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 23 |
| 758 | 32.48 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 18 | 11 |
| 767 | 32.49 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 7 |
| 782 | 32.49 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 799 | 32.50 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 810 | 32.51 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 4 |
| 819 | 32.51 | radiation | 20.0 | 10 | < th | dose independent | rect. | 15 | 23 |
| 821 | 32.51 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 823 | 32.51 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 839 | 32.52 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 19 |
| 847 | 32.53 | radiation | 20.0 | 10 | < th | dose independent | no | NA | NA |
| 850 | 32.53 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 853 | 32.53 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 854 | 32.53 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 860 | 32.53 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 861 | 32.53 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 877 | 32.54 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 9 | 8 |
| 883 | 32.55 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 1 |
| 888 | 32.55 | wind | 1.0 | 30 | > th | dose independent | rect. | 15 | 18 |
| 891 | 32.55 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 953 | 32.58 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 20 |
| 960 | 32.58 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 8 |
| 965 | 32.58 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 967 | 32.58 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 968 | 32.58 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 981 | 32.59 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 8 |
| 987 | 32.59 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 1000 | 32.60 | wind | 1.0 | 30 | > th | dose independent | rect. | 17 | 16 |