BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0275300 Os07g0275300|AK067254
(253 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G24440.1 | chr1:8662340-8663777 FORWARD LENGTH=252 241 4e-64
AT1G13195.1 | chr1:4501778-4503347 REVERSE LENGTH=261 239 1e-63
AT3G47160.2 | chr3:17360238-17361879 REVERSE LENGTH=258 233 9e-62
AT5G58787.1 | chr5:23742733-23744324 FORWARD LENGTH=243 227 5e-60
AT5G01520.1 | chr5:206797-208399 FORWARD LENGTH=243 215 1e-56
>AT1G24440.1 | chr1:8662340-8663777 FORWARD LENGTH=252
Length = 251
Score = 241 bits (614), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 160/243 (65%), Gaps = 5/243 (2%)
Query: 14 RGPLKALEADIHHANTMANAIQRNYGGACVQMRLSCSSLAPFFLYLIQWLDCGCCYALPS 73
R LK LEADI HAN +A I G +QM+L CS+LAPFF++L+QW+D C LP
Sbjct: 11 RDSLKILEADIEHANGLAAEIPMGKSGVRLQMKLVCSNLAPFFIFLLQWMDFSC--LLPR 68
Query: 74 YLGLFHILICKVYADGDSSVSTYERRASLREFYAIIYPILQQLE---GSLIERDLKGKGR 130
Y FHILI KV ADG + S Y R+A++REFY +I P L++L L + L
Sbjct: 69 YFDFFHILIYKVRADGRWNRSRYGRKATIREFYGVILPSLERLHINFADLPDESLWYPNP 128
Query: 131 CKDIVSRKRLEDWRKLCNKDVEREDECGICMETCTKMVLPNCSHAMCIKCYRDWYRRSES 190
+ +E R + + D+EREDECGIC+E CTKMVLPNC HAMCIKCYR+W +SES
Sbjct: 129 KAITKKQYDIEGSRYMNSIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSES 188
Query: 191 CPFCRGSLKRIRSRDLWVLTNYNDVVDPVTLERENVRHFYSYIDSLPLILPDNIFFFYYD 250
CPFCRGS+KR+ S DLWVLT DVVDP T+ +E++ FY +I+SLP P+ F Y +
Sbjct: 189 CPFCRGSIKRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINSLPKDYPEAAFLVYNE 248
Query: 251 YLL 253
YL+
Sbjct: 249 YLI 251
>AT1G13195.1 | chr1:4501778-4503347 REVERSE LENGTH=261
Length = 260
Score = 239 bits (609), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 158/237 (66%), Gaps = 2/237 (0%)
Query: 17 LKALEADIHHANTMANAIQRNYGGACVQMRLSCSSLAPFFLYLIQWLDCGCCYALPSYLG 76
LK LEAD+ HAN++A AI +QM+L S+ A L+L++W+D +P YL
Sbjct: 20 LKVLEADVQHANSLAEAIPMGKNNVRLQMKLVHSNFASLLLFLLRWIDLSSSCLIPRYLN 79
Query: 77 LFHILICKVYADGDSSVSTYERRASLREFYAIIYPILQQLEGSLIERDLKGKGRCKDIVS 136
LFH+L+ KV +DG ++T+ R+A++ EFY +I P LQ L +L E + G +S
Sbjct: 80 LFHVLVYKVQSDGQPKLTTHGRKATISEFYGVILPSLQLLHSNLDELETTDIGFDLKRLS 139
Query: 137 RKRLEDWR--KLCNKDVEREDECGICMETCTKMVLPNCSHAMCIKCYRDWYRRSESCPFC 194
+K ++ R + N +ERE+ECGIC+ETCTKMVLPNC H+MCIKCYR+W +S+SCPFC
Sbjct: 140 KKITKEARSSRFSNAGLEREEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKSQSCPFC 199
Query: 195 RGSLKRIRSRDLWVLTNYNDVVDPVTLERENVRHFYSYIDSLPLILPDNIFFFYYDY 251
RGS+KR+ S DLWVL NDVVD T RE++ FY YI+SLP P+ +F YY+Y
Sbjct: 200 RGSMKRVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINSLPKDYPEALFVVYYEY 256
>AT3G47160.2 | chr3:17360238-17361879 REVERSE LENGTH=258
Length = 257
Score = 233 bits (593), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 120/249 (48%), Positives = 160/249 (64%), Gaps = 17/249 (6%)
Query: 10 QLPLRGPLKALEADIHHANT-MANAIQ-----------RNYGGACVQMRLSCSSLAPFFL 57
++ + LKALEADI HANT ++N + R GA VQMRLS + A F L
Sbjct: 3 KVSFKDSLKALEADIQHANTVLSNELGDEVIFRALDYPREKDGARVQMRLSYTPAAQFLL 62
Query: 58 YLIQWLDCGCCYALPSYLGLFHILICKVYADGDSSVSTYERRASLREFYAIIYPILQQLE 117
+L+QW DC L LGL +LI YADG +++S YER+ S+++FYA+I+P L QLE
Sbjct: 63 FLVQWTDCH----LAGTLGLLRVLIYMTYADGKTTMSVYERKTSIKDFYAVIFPSLLQLE 118
Query: 118 GSLIE-RDLKGKGRCKDIVSRKRLEDWRKLCNKDVEREDECGICMETCTKMVLPNCSHAM 176
+ + D K K CK K + KL D+ERE+ECGICME +VLPNC+H++
Sbjct: 119 RGITDLDDRKQKEVCKIRYRNKDETEKVKLSEIDIEREEECGICMEMNNMVVLPNCTHSL 178
Query: 177 CIKCYRDWYRRSESCPFCRGSLKRIRSRDLWVLTNYNDVVDPVTLERENVRHFYSYIDSL 236
CIKCYRDW+ RSESCPFCR SLKR+ S DLW+L +D V+ T+EREN + + YI+ L
Sbjct: 179 CIKCYRDWHGRSESCPFCRDSLKRVNSGDLWMLMEKSDTVNMYTIERENKKRLFVYIEKL 238
Query: 237 PLILPDNIF 245
PL++PD +F
Sbjct: 239 PLVVPDQVF 247
>AT5G58787.1 | chr5:23742733-23744324 FORWARD LENGTH=243
Length = 242
Score = 227 bits (578), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 120/237 (50%), Positives = 160/237 (67%), Gaps = 8/237 (3%)
Query: 10 QLPLRGPLKALEADIHHANTMANAIQRNYGGACVQMRLSCSSLAPFFLYLIQWLDCGCCY 69
+L + LKALEADI HANT+A R GA VQMRLS S A FFL+L+QW DC
Sbjct: 3 KLSFKDSLKALEADIQHANTLALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTDC---- 58
Query: 70 ALPSYLGLFHILICKVYADGDSSVSTYERRASLREFYAIIYPILQQLEGSLIE-RDLKGK 128
L +LGL +LI YADG +++S YER+AS+REF A+I P L QL+ + + D K K
Sbjct: 59 KLAGFLGLLRVLIYMTYADGKTTMSVYERKASIREFQAVILPSLSQLQRGVTDIDDSKQK 118
Query: 129 GRCKDIVSRKRLEDWRKLCNKDVEREDECGICMETCTKMVLPNCSHAMCIKCYRDWYRRS 188
CK R R +D ++ ++ERE+ECGICME +K+VLPNC+H++CIKCYRDW RS
Sbjct: 119 EVCK---MRYRKKDESEMSEIEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGRS 175
Query: 189 ESCPFCRGSLKRIRSRDLWVLTNYNDVVDPVTLERENVRHFYSYIDSLPLILPDNIF 245
+SCPFCR SLKR+ S DLW+ + ND V+ + REN + + YI+ LPL++PD ++
Sbjct: 176 QSCPFCRDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPDQVY 232
>AT5G01520.1 | chr5:206797-208399 FORWARD LENGTH=243
Length = 242
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 146/231 (63%), Gaps = 5/231 (2%)
Query: 13 LRGPLKALEADIHHANTMANAIQRNYGGACVQMRLSCSSLAPFFLYLIQWLDCGCCYALP 72
+ LKALEADI ANT+A+ Y G VQMRLS S A FL+L+QW DC AL
Sbjct: 5 FKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFAGAL- 63
Query: 73 SYLGLFHILICKVYADGDSSVSTYERRASLREFYAIIYPILQQLEGSLIE-RDLKGKGRC 131
GL ILI K Y DG +++S +ER+ S+REFY +++P L QL G + + + K K C
Sbjct: 64 ---GLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEIC 120
Query: 132 KDIVSRKRLEDWRKLCNKDVEREDECGICMETCTKMVLPNCSHAMCIKCYRDWYRRSESC 191
+K D K+ D+ERE+ECGIC+E K+VLP C+H+MCI CYR+W RS+SC
Sbjct: 121 DKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSC 180
Query: 192 PFCRGSLKRIRSRDLWVLTNYNDVVDPVTLERENVRHFYSYIDSLPLILPD 242
PFCRGSLKR+ S DLW+ T ++ D + +EN++ YID LPL+ D
Sbjct: 181 PFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSD 231
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.142 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,007,202
Number of extensions: 255674
Number of successful extensions: 1186
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1224
Number of HSP's successfully gapped: 7
Length of query: 253
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 157
Effective length of database: 8,474,633
Effective search space: 1330517381
Effective search space used: 1330517381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)