BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0436800 Os10g0436800|J065174L12
         (83 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0436800  Similar to 1,4-benzoquinone reductase               173   3e-44
Os03g0748500  Flavodoxin/nitric oxide synthase domain contai...   128   1e-30
Os08g0139200  Similar to F-171-b1_1 (Fragment)                    110   2e-25
Os01g0784800  Flavodoxin/nitric oxide synthase domain contai...   107   3e-24
Os05g0501300  Similar to Flavoprotein wrbA (Trp repressor bi...   106   4e-24

>Os10g0436800 Similar to 1,4-benzoquinone reductase
          Length = 83

 Score =  173 bits (438), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  PCFSVHFSWTAITQIVHHGMLFVPIGYTFGSGMFKMDEIRGGSPYGAGVFAGDGSRQPSE 60
          PCFSVHFSWTAITQIVHHGMLFVPIGYTFGSGMFKMDEIRGGSPYGAGVFAGDGSRQPSE
Sbjct: 1  PCFSVHFSWTAITQIVHHGMLFVPIGYTFGSGMFKMDEIRGGSPYGAGVFAGDGSRQPSE 60

Query: 61 TELALAEHQGKYMASIVKKLAQA 83
          TELALAEHQGKYMASIVKKLAQA
Sbjct: 61 TELALAEHQGKYMASIVKKLAQA 83



>Os03g0748500 Flavodoxin/nitric oxide synthase domain containing protein
          Length = 252

 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 66/73 (90%)

Query: 8   SWTAITQIVHHGMLFVPIGYTFGSGMFKMDEIRGGSPYGAGVFAGDGSRQPSETELALAE 67
           +WTAITQ+ HHGMLFVPIGYTFG GM +M E+RGGSPYGAGVF+GDGSR PSE ELALAE
Sbjct: 175 AWTAITQLAHHGMLFVPIGYTFGEGMLEMGELRGGSPYGAGVFSGDGSRPPSELELALAE 234

Query: 68  HQGKYMASIVKKL 80
           H GKYMA++VKK+
Sbjct: 235 HHGKYMATLVKKM 247



>Os08g0139200 Similar to F-171-b1_1 (Fragment)
          Length = 203

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 61/71 (85%)

Query: 10  TAITQIVHHGMLFVPIGYTFGSGMFKMDEIRGGSPYGAGVFAGDGSRQPSETELALAEHQ 69
           TAITQ+VHHGM+FVP+GYTFG+GMF+M++++GGSPYG+G FAGDGSR  +E EL  A HQ
Sbjct: 129 TAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRVATELELQQAFHQ 188

Query: 70  GKYMASIVKKL 80
           GKY A I KKL
Sbjct: 189 GKYFAGIAKKL 199



>Os01g0784800 Flavodoxin/nitric oxide synthase domain containing protein
          Length = 203

 Score =  107 bits (266), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 57/71 (80%)

Query: 10  TAITQIVHHGMLFVPIGYTFGSGMFKMDEIRGGSPYGAGVFAGDGSRQPSETELALAEHQ 69
           TAITQ+ HHGM+FVP+GYTFG+ MF M E++GGSPYGAG FA DGSR P+E EL  A HQ
Sbjct: 129 TAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGSPYGAGTFAADGSRWPTEMELEHAFHQ 188

Query: 70  GKYMASIVKKL 80
           GKY A I KKL
Sbjct: 189 GKYFAGIAKKL 199



>Os05g0501300 Similar to Flavoprotein wrbA (Trp repressor binding protein)
          Length = 205

 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 57/74 (77%)

Query: 10  TAITQIVHHGMLFVPIGYTFGSGMFKMDEIRGGSPYGAGVFAGDGSRQPSETELALAEHQ 69
           TA+TQ+ HHGM+FVP+GYTFG+ MF M  + GGSPYGAG FAGDGSR PSE EL  A HQ
Sbjct: 129 TAVTQLAHHGMVFVPVGYTFGAKMFDMAAVHGGSPYGAGTFAGDGSRWPSEAELEHAFHQ 188

Query: 70  GKYMASIVKKLAQA 83
           GKY A I KKL  A
Sbjct: 189 GKYFAGIAKKLKGA 202



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,196,155
Number of extensions: 149257
Number of successful extensions: 372
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 5
Length of query: 83
Length of database: 17,035,801
Length adjustment: 53
Effective length of query: 30
Effective length of database: 14,268,459
Effective search space: 428053770
Effective search space used: 428053770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)