Os05g0501300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Flavoprotein wrbA (Trp repressor binding protein).
FiT-DB / Search/ Help/ Sample detail
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Os05g0501300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Flavoprotein wrbA (Trp repressor binding protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 279.52 | 0.786 | 9.93 | -1.23 | 1.31 | -2.51 | 2.51 | 1.04 | 0.00726 | 5.92 | 48.28 | 1192 | 12.9 | -- |
| 280.74 | 0.78 | 9.92 | -1.15 | 1.3 | -2.46 | 2.77 | -- | 0.0217 | 5.87 | 49 | 1179 | 12.9 | -- |
| 293.22 | 0.798 | 9.94 | -1.3 | 1.35 | -2.58 | -- | 2.08 | -0.017 | 5.83 | 47.95 | 1184 | 12.9 | -- |
| 299.4 | 0.806 | 9.93 | -1.12 | 1.3 | -2.44 | -- | -- | 0.0114 | 6.01 | 49 | 1197 | 12.9 | -- |
| 309.95 | 0.82 | 9.99 | -1.24 | -- | -2.63 | -- | 1.09 | -0.0918 | -- | 36.27 | 1680 | 13.3 | -- |
| 390.77 | 0.927 | 9.92 | -1.03 | 0.839 | -- | 2.73 | -- | 0.057 | 6.19 | -- | -- | -- | -- |
| 408.09 | 0.946 | 9.93 | -0.993 | 0.86 | -- | -- | -- | 0.0493 | 6.74 | -- | -- | -- | -- |
| 305.66 | 0.814 | 9.96 | -1.06 | -- | -2.53 | -- | -- | 5.71e-06 | -- | 18.31 | 1627 | 12.9 | -- |
| 331.05 | 0.847 | 9.88 | -- | 1.72 | -2.84 | -- | -- | 0.141 | 6.26 | 47.27 | 1144 | 11.4 | -- |
| 446.72 | 0.988 | 9.95 | -0.974 | -- | -- | -- | -- | 0.0662 | -- | -- | -- | -- | -- |
| 434.08 | 0.975 | 9.9 | -- | 0.848 | -- | -- | -- | 0.16 | 6.81 | -- | -- | -- | -- |
| 334.05 | 0.851 | 9.9 | -- | -- | -2.42 | -- | -- | 0.152 | -- | 6.31 | 1566 | 12.1 | -- |
| 471.73 | 1.01 | 9.92 | -- | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 283.57 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 4 | 284.65 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 5 | 284.65 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 7 | 284.75 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 12 | 284.91 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 16 |
| 14 | 285.05 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 18 | 285.13 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 15 |
| 19 | 285.14 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 15 |
| 28 | 285.59 | humidity | 50 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 58 | 286.42 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 61 | 286.57 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |
| 63 | 286.60 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 71 | 286.73 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 76 | 286.84 | wind | 7 | 43200 | < th | dose independent | sin | 15 | NA |
| 81 | 286.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 87 | 287.03 | wind | 7 | 43200 | > th | dose independent | sin | 15 | NA |
| 91 | 287.04 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 97 | 287.15 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 10 |
| 110 | 287.31 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 163 | 287.87 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 178 | 288.05 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 180 | 288.12 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 186 | 288.20 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 198 | 288.33 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 199 | 288.34 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 204 | 288.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 206 | 288.42 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 226 | 288.64 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 266 | 289.23 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 293 | 289.77 | humidity | 50 | 1440 | > th | dose dependent | sin | 19 | NA |
| 318 | 289.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 319 | 289.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 348 | 290.31 | humidity | 90 | 1440 | < th | dose dependent | sin | 18 | NA |
| 358 | 290.37 | humidity | 80 | 1440 | < th | dose dependent | rect. | 14 | 19 |
| 463 | 291.30 | humidity | 80 | 1440 | < th | dose dependent | sin | 15 | NA |
| 492 | 291.54 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 499 | 291.64 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 619 | 292.48 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 22 |
| 620 | 292.48 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 22 |
| 627 | 292.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 650 | 292.60 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 18 |
| 670 | 292.72 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 672 | 292.73 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 678 | 292.74 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 687 | 292.78 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 693 | 292.81 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 706 | 292.84 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 713 | 292.87 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 714 | 292.87 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 718 | 292.88 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 15 |
| 725 | 292.92 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 15 |
| 800 | 293.14 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 15 |
| 890 | 293.41 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 892 | 293.41 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 930 | 293.52 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 934 | 293.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 947 | 293.58 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 990 | 293.74 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |