BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0501300 Os05g0501300|AK059889
         (205 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0501300  Similar to Flavoprotein wrbA (Trp repressor bi...   385   e-107
Os01g0784800  Flavodoxin/nitric oxide synthase domain contai...   349   8e-97
Os08g0139200  Similar to F-171-b1_1 (Fragment)                    320   4e-88
Os03g0748500  Flavodoxin/nitric oxide synthase domain contai...   209   2e-54
Os10g0436800  Similar to 1,4-benzoquinone reductase               106   9e-24

>Os05g0501300 Similar to Flavoprotein wrbA (Trp repressor binding protein)
          Length = 205

 Score =  385 bits (989), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/205 (94%), Positives = 194/205 (94%)

Query: 1   MAVKVYVVYYSMYGHVAKLAEEIKKGASSVEGVEVKIWQVPETLSEEVLGKMGAPPRSDA 60
           MAVKVYVVYYSMYGHVAKLAEEIKKGASSVEGVEVKIWQVPETLSEEVLGKMGAPPRSDA
Sbjct: 1   MAVKVYVVYYSMYGHVAKLAEEIKKGASSVEGVEVKIWQVPETLSEEVLGKMGAPPRSDA 60

Query: 61  PVIAPQELAEADGVLFGFPTRFGMMAAQMKAFFDATGGLWREQSLAGKPAGVFFSXXXXX 120
           PVIAPQELAEADGVLFGFPTRFGMMAAQMKAFFDATGGLWREQSLAGKPAGVFFS     
Sbjct: 61  PVIAPQELAEADGVLFGFPTRFGMMAAQMKAFFDATGGLWREQSLAGKPAGVFFSTGTQG 120

Query: 121 XXXXXXPLTAVTQLAHHGMVFVPVGYTFGAKMFDMAAVHGGSPYGAGTFAGDGSRWPSEA 180
                 PLTAVTQLAHHGMVFVPVGYTFGAKMFDMAAVHGGSPYGAGTFAGDGSRWPSEA
Sbjct: 121 GGQETTPLTAVTQLAHHGMVFVPVGYTFGAKMFDMAAVHGGSPYGAGTFAGDGSRWPSEA 180

Query: 181 ELEHAFHQGKYFAGIAKKLKGASSA 205
           ELEHAFHQGKYFAGIAKKLKGASSA
Sbjct: 181 ELEHAFHQGKYFAGIAKKLKGASSA 205



>Os01g0784800 Flavodoxin/nitric oxide synthase domain containing protein
          Length = 203

 Score =  349 bits (895), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 169/203 (83%), Positives = 178/203 (87%)

Query: 1   MAVKVYVVYYSMYGHVAKLAEEIKKGASSVEGVEVKIWQVPETLSEEVLGKMGAPPRSDA 60
           MAVKVYVVYYSMYGHVAKLAEEIKKGASS+EGVE KIWQVPETL EEVLGKMGAPP+ D 
Sbjct: 1   MAVKVYVVYYSMYGHVAKLAEEIKKGASSIEGVEAKIWQVPETLHEEVLGKMGAPPKPDV 60

Query: 61  PVIAPQELAEADGVLFGFPTRFGMMAAQMKAFFDATGGLWREQSLAGKPAGVFFSXXXXX 120
           P I PQEL EADG+LFGFPTRFGMMAAQMKAFFDATGGLW EQSLAGKPAG+FFS     
Sbjct: 61  PTITPQELTEADGILFGFPTRFGMMAAQMKAFFDATGGLWSEQSLAGKPAGIFFSTGTQG 120

Query: 121 XXXXXXPLTAVTQLAHHGMVFVPVGYTFGAKMFDMAAVHGGSPYGAGTFAGDGSRWPSEA 180
                 PLTA+TQL HHGMVFVPVGYTFGAKMF+M  V GGSPYGAGTFA DGSRWP+E 
Sbjct: 121 GGQETTPLTAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGSPYGAGTFAADGSRWPTEM 180

Query: 181 ELEHAFHQGKYFAGIAKKLKGAS 203
           ELEHAFHQGKYFAGIAKKLKG++
Sbjct: 181 ELEHAFHQGKYFAGIAKKLKGSA 203



>Os08g0139200 Similar to F-171-b1_1 (Fragment)
          Length = 203

 Score =  320 bits (821), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 153/203 (75%), Positives = 172/203 (84%)

Query: 1   MAVKVYVVYYSMYGHVAKLAEEIKKGASSVEGVEVKIWQVPETLSEEVLGKMGAPPRSDA 60
           MA K+Y+VYYSMYGHVAKLAEEI+KGASSVEGVEVK+WQVPETLS++VL KMGAP + D 
Sbjct: 1   MAAKIYIVYYSMYGHVAKLAEEIEKGASSVEGVEVKLWQVPETLSDDVLTKMGAPSKKDV 60

Query: 61  PVIAPQELAEADGVLFGFPTRFGMMAAQMKAFFDATGGLWREQSLAGKPAGVFFSXXXXX 120
           P+I P ELAEADGV+FGFPTRFGMMAAQ KAF DATGGLWR Q LAGKPAG+F+S     
Sbjct: 61  PIITPAELAEADGVIFGFPTRFGMMAAQFKAFMDATGGLWRTQQLAGKPAGIFYSTGSQG 120

Query: 121 XXXXXXPLTAVTQLAHHGMVFVPVGYTFGAKMFDMAAVHGGSPYGAGTFAGDGSRWPSEA 180
                 PLTA+TQL HHGM+FVPVGYTFGA MF+M  V GGSPYG+GTFAGDGSR  +E 
Sbjct: 121 GGQETTPLTAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRVATEL 180

Query: 181 ELEHAFHQGKYFAGIAKKLKGAS 203
           EL+ AFHQGKYFAGIAKKLKG++
Sbjct: 181 ELQQAFHQGKYFAGIAKKLKGSA 203



>Os03g0748500 Flavodoxin/nitric oxide synthase domain containing protein
          Length = 252

 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/204 (53%), Positives = 131/204 (64%), Gaps = 7/204 (3%)

Query: 3   VKVYVVYYSMYGHVAKLAEEIKKGASSVEGVEVKIWQVPETLSEEVLGKMGAPPRSDA-- 60
           V++YVV+YSMYGHV  LA  + +G  SV G    +++VPETL   VL +M A        
Sbjct: 44  VRIYVVFYSMYGHVRLLARAVARGVGSVPGARAILFRVPETLPPAVLARMEADDGGGGGD 103

Query: 61  -----PVIAPQELAEADGVLFGFPTRFGMMAAQMKAFFDATGGLWREQSLAGKPAGVFFS 115
                PV+ P  L +ADG LFGFP RFG M AQM+AFFD+T  L R Q LAGKPAG+F S
Sbjct: 104 GEDVIPVVDPDGLPDADGFLFGFPARFGAMPAQMQAFFDSTVPLCRHQRLAGKPAGLFVS 163

Query: 116 XXXXXXXXXXXPLTAVTQLAHHGMVFVPVGYTFGAKMFDMAAVHGGSPYGAGTFAGDGSR 175
                        TA+TQLAHHGM+FVP+GYTFG  M +M  + GGSPYGAG F+GDGSR
Sbjct: 164 TGTQAGGQETTAWTAITQLAHHGMLFVPIGYTFGEGMLEMGELRGGSPYGAGVFSGDGSR 223

Query: 176 WPSEAELEHAFHQGKYFAGIAKKL 199
            PSE EL  A H GKY A + KK+
Sbjct: 224 PPSELELALAEHHGKYMATLVKKM 247



>Os10g0436800 Similar to 1,4-benzoquinone reductase
          Length = 83

 Score =  106 bits (265), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 57/74 (77%)

Query: 129 TAVTQLAHHGMVFVPVGYTFGAKMFDMAAVHGGSPYGAGTFAGDGSRWPSEAELEHAFHQ 188
           TA+TQ+ HHGM+FVP+GYTFG+ MF M  + GGSPYGAG FAGDGSR PSE EL  A HQ
Sbjct: 10  TAITQIVHHGMLFVPIGYTFGSGMFKMDEIRGGSPYGAGVFAGDGSRQPSETELALAEHQ 69

Query: 189 GKYFAGIAKKLKGA 202
           GKY A I KKL  A
Sbjct: 70  GKYMASIVKKLAQA 83



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,238,936
Number of extensions: 318653
Number of successful extensions: 780
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 779
Number of HSP's successfully gapped: 5
Length of query: 205
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 109
Effective length of database: 12,023,257
Effective search space: 1310535013
Effective search space used: 1310535013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)