Os08g0139200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to F-171-b1_1 (Fragment).
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Os08g0139200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to F-171-b1_1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.73 | 0.414 | 10.7 | -2.36 | 0.616 | 1.66 | 0.634 | -4.96 | -0.434 | 7.8 | 26.1 | 1276 | -- | -- |
| 88.79 | 0.439 | 10.6 | -1.31 | 0.581 | 1.24 | 0.682 | -- | -0.368 | 7.31 | 21.88 | 5649 | -- | -- |
| 78.78 | 0.413 | 10.7 | -2.39 | 0.625 | 1.69 | -- | -5.27 | -0.418 | 7.77 | 26.32 | 1269 | -- | -- |
| 89.44 | 0.44 | 10.5 | -1.11 | 0.626 | 1.22 | -- | -- | -0.236 | 8.13 | 25.81 | 2584 | -- | -- |
| 98.57 | 0.462 | 10.7 | -2.45 | -- | 1.68 | -- | -5.37 | -0.416 | -- | 26.39 | 1338 | -- | -- |
| 137.63 | 0.55 | 10.5 | -0.75 | 0.618 | -- | 0.704 | -- | -0.0931 | 6.67 | -- | -- | -- | -- |
| 138.87 | 0.552 | 10.5 | -0.74 | 0.621 | -- | -- | -- | -0.0954 | 6.57 | -- | -- | -- | -- |
| 108.06 | 0.484 | 10.5 | -1.14 | -- | 1.07 | -- | -- | -0.146 | -- | 25.94 | 5687 | -- | -- |
| 118.06 | 0.506 | 10.5 | -- | 0.626 | 0.926 | -- | -- | 0.0171 | 7.51 | 26.9 | 2597 | -- | -- |
| 158.96 | 0.589 | 10.5 | -0.725 | -- | -- | -- | -- | -0.0827 | -- | -- | -- | -- | -- |
| 153.3 | 0.579 | 10.5 | -- | 0.612 | -- | -- | -- | -0.013 | 6.64 | -- | -- | -- | -- |
| 136.1 | 0.543 | 10.5 | -- | -- | 0.806 | -- | -- | -0.114 | -- | 28.1 | 7071 | -- | -- |
| 172.82 | 0.614 | 10.5 | -- | -- | -- | -- | -- | -0.00231 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.64 | radiation | 40 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 2 | 74.92 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 3 | 75.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 8 | 75.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 13 | 75.38 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 14 | 75.53 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 18 | 75.79 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 39 | 75.95 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 41 | 76.06 | radiation | 40 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 46 | 76.19 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 60 | 76.27 | radiation | 30 | 4320 | > th | dose dependent | rect. | 16 | 17 |
| 62 | 76.30 | radiation | 40 | 4320 | < th | dose independent | rect. | 23 | 10 |
| 67 | 76.37 | radiation | 30 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 127 | 76.69 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 136 | 77.13 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 139 | 77.15 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 174 | 78.26 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 176 | 78.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 180 | 78.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 181 | 78.54 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 191 | 78.61 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 192 | 78.61 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 195 | 78.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 202 | 78.71 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 218 | 78.83 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 280 | 79.25 | radiation | 40 | 4320 | > th | dose dependent | rect. | 13 | 21 |
| 281 | 79.26 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 289 | 79.36 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 301 | 79.51 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 305 | 79.55 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 312 | 79.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 330 | 79.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 370 | 79.98 | wind | 1 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 463 | 80.27 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 7 |
| 491 | 80.41 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 515 | 80.50 | radiation | 20 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 516 | 80.51 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 561 | 80.61 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 643 | 80.80 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 650 | 80.84 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 653 | 80.85 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 679 | 80.89 | radiation | 40 | 4320 | > th | dose dependent | sin | 12 | NA |
| 686 | 80.93 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 698 | 81.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 712 | 81.16 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 728 | 81.22 | radiation | 40 | 4320 | < th | dose independent | sin | 12 | NA |
| 739 | 81.25 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 753 | 81.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 754 | 81.30 | wind | 3 | 43200 | > th | dose dependent | rect. | 8 | 6 |
| 768 | 81.32 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 22 |
| 782 | 81.38 | radiation | 1 | 14400 | < th | dose dependent | sin | 16 | NA |
| 806 | 81.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 19 |
| 831 | 81.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 15 |
| 843 | 81.53 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 12 |
| 860 | 81.58 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 19 |
| 882 | 81.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 886 | 81.67 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 899 | 81.72 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 929 | 81.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 16 |
| 988 | 81.88 | radiation | 1 | 14400 | < th | dose independent | sin | 12 | NA |
| 994 | 81.89 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 9 |