BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0139200 Os08g0139200|AK070351
(203 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G27270.1 | chr4:13661458-13663243 REVERSE LENGTH=206 328 1e-90
AT5G54500.2 | chr5:22124674-22126435 FORWARD LENGTH=245 256 8e-69
AT5G58800.1 | chr5:23746032-23746895 REVERSE LENGTH=208 250 4e-67
AT4G36750.1 | chr4:17324642-17326215 FORWARD LENGTH=274 247 3e-66
>AT4G27270.1 | chr4:13661458-13663243 REVERSE LENGTH=206
Length = 205
Score = 328 bits (841), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 161/203 (79%), Positives = 171/203 (84%)
Query: 1 MAAKIYIVYYSMYGHVAKLAEEIEKGASSVEGVEVKLWQVPETLSDDVLTKMGAPSKKDV 60
MA K+YIVYYSMYGHV KLA+EI KGA+SV+GVE LWQVPETL +DVL+KM AP K D
Sbjct: 1 MATKVYIVYYSMYGHVEKLAQEIRKGAASVDGVEAILWQVPETLQEDVLSKMSAPPKSDA 60
Query: 61 PIITPAELAEADGVIFGFPTRFGMMAAQFKAFMDATGGLWRTQQLAGKPAGIFYXXXXXX 120
PIITP ELAEADG IFGFPTRFGMMAAQFKAF+DATGGLWRTQQLAGKPAGIFY
Sbjct: 61 PIITPNELAEADGFIFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQG 120
Query: 121 XXXXXXPLTAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRVATEL 180
LTAITQLVHHGMIFVP+GYTFGAGMFEME VKGGSPYG+GTFAGDGSR TEL
Sbjct: 121 GGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMENVKGGSPYGAGTFAGDGSRQPTEL 180
Query: 181 ELQQAFHQGKYFAGIAKKLKGSA 203
EL QAFHQGKY A I+KKLKG A
Sbjct: 181 ELGQAFHQGKYIAAISKKLKGPA 203
>AT5G54500.2 | chr5:22124674-22126435 FORWARD LENGTH=245
Length = 244
Score = 256 bits (653), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 122/162 (75%), Positives = 133/162 (82%)
Query: 1 MAAKIYIVYYSMYGHVAKLAEEIEKGASSVEGVEVKLWQVPETLSDDVLTKMGAPSKKDV 60
MA K+YIVYYSMYGHV KLAEEI KGA+SVEGVE KLWQVPETL ++ L+KM AP K +
Sbjct: 1 MATKVYIVYYSMYGHVEKLAEEIRKGAASVEGVEAKLWQVPETLHEEALSKMSAPPKSES 60
Query: 61 PIITPAELAEADGVIFGFPTRFGMMAAQFKAFMDATGGLWRTQQLAGKPAGIFYXXXXXX 120
PIITP ELAEADG +FGFPTRFGMMAAQFKAF+DATGGLWR Q LAGKPAGIFY
Sbjct: 61 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRAQALAGKPAGIFYSTGSQG 120
Query: 121 XXXXXXPLTAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGS 162
LTAITQLVHHGM+FVP+GYTFGAGMFEME VK G+
Sbjct: 121 GGQETTALTAITQLVHHGMLFVPIGYTFGAGMFEMENVKAGA 162
>AT5G58800.1 | chr5:23746032-23746895 REVERSE LENGTH=208
Length = 207
Score = 250 bits (638), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 124/198 (62%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 4 KIYIVYYSMYGHVAKLAEEIEKGASSVEGVEVKLWQVPETLSDDVLTKMGA-PSKKDVPI 62
KIYIVYYS++GHV +A E+ +G +SV VE LWQVPETL + +L K+ A P DVP
Sbjct: 5 KIYIVYYSLHGHVETMAREVLRGVNSVPDVEATLWQVPETLPEKILEKVKAVPRPDDVPD 64
Query: 63 ITPAELAEADGVIFGFPTRFGMMAAQFKAFMDATGGLWRTQQLAGKPAGIFYXXXXXXXX 122
I P +LAEADG +FGFP+RFG+MA+Q F D T LW TQ LAGKPAGIF+
Sbjct: 65 IRPEQLAEADGFMFGFPSRFGVMASQVMTFFDNTNDLWTTQALAGKPAGIFWSTGFHGGG 124
Query: 123 XXXXPLTAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRVATELEL 182
LTA+T+L HHGMIFVPVGYTFG M+EM +VKGGSPYGSGT+A DGSR TELE+
Sbjct: 125 QELTALTAVTKLAHHGMIFVPVGYTFGKSMYEMGEVKGGSPYGSGTYAADGSREPTELEI 184
Query: 183 QQAFHQGKYFAGIAKKLK 200
QQA + GKYFAGIAKKLK
Sbjct: 185 QQANYHGKYFAGIAKKLK 202
>AT4G36750.1 | chr4:17324642-17326215 FORWARD LENGTH=274
Length = 273
Score = 247 bits (631), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/197 (61%), Positives = 146/197 (74%), Gaps = 1/197 (0%)
Query: 4 KIYIVYYSMYGHVAKLAEEIEKGASSVEGVEVKLWQVPETLSDDVLTKMGAPSKK-DVPI 62
KI++V+YSMYGHV LA+ ++KG SVEGVE L++VPETLS +V+ +M AP K ++P
Sbjct: 74 KIFVVFYSMYGHVESLAKRMKKGVDSVEGVEATLYRVPETLSQEVVEQMKAPVKDLEIPE 133
Query: 63 ITPAELAEADGVIFGFPTRFGMMAAQFKAFMDATGGLWRTQQLAGKPAGIFYXXXXXXXX 122
IT AEL ADG +FGFPTR+G MAAQ KAF D+TG LW+ Q LAGKPAG F
Sbjct: 134 ITAAELTAADGFLFGFPTRYGCMAAQMKAFFDSTGSLWKEQSLAGKPAGFFVSTGTQGGG 193
Query: 123 XXXXPLTAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRVATELEL 182
TAITQLVHHGM+FVP+GYTFGAGMF+M+ ++GGSPYG+G FAGDGSR ATE EL
Sbjct: 194 QETTAWTAITQLVHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGDGSREATETEL 253
Query: 183 QQAFHQGKYFAGIAKKL 199
A HQG Y A I K+L
Sbjct: 254 ALAEHQGNYMAAIVKRL 270
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,109,062
Number of extensions: 166788
Number of successful extensions: 394
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 4
Length of query: 203
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 109
Effective length of database: 8,529,465
Effective search space: 929711685
Effective search space used: 929711685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)