BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0139200 Os08g0139200|AK070351
(203 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0139200 Similar to F-171-b1_1 (Fragment) 381 e-106
Os05g0501300 Similar to Flavoprotein wrbA (Trp repressor bi... 317 3e-87
Os01g0784800 Flavodoxin/nitric oxide synthase domain contai... 315 1e-86
Os03g0748500 Flavodoxin/nitric oxide synthase domain contai... 207 5e-54
Os10g0436800 Similar to 1,4-benzoquinone reductase 110 7e-25
>Os08g0139200 Similar to F-171-b1_1 (Fragment)
Length = 203
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/203 (94%), Positives = 191/203 (94%)
Query: 1 MAAKIYIVYYSMYGHVAKLAEEIEKGASSVEGVEVKLWQVPETLSDDVLTKMGAPSKKDV 60
MAAKIYIVYYSMYGHVAKLAEEIEKGASSVEGVEVKLWQVPETLSDDVLTKMGAPSKKDV
Sbjct: 1 MAAKIYIVYYSMYGHVAKLAEEIEKGASSVEGVEVKLWQVPETLSDDVLTKMGAPSKKDV 60
Query: 61 PIITPAELAEADGVIFGFPTRFGMMAAQFKAFMDATGGLWRTQQLAGKPAGIFYXXXXXX 120
PIITPAELAEADGVIFGFPTRFGMMAAQFKAFMDATGGLWRTQQLAGKPAGIFY
Sbjct: 61 PIITPAELAEADGVIFGFPTRFGMMAAQFKAFMDATGGLWRTQQLAGKPAGIFYSTGSQG 120
Query: 121 XXXXXXPLTAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRVATEL 180
PLTAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRVATEL
Sbjct: 121 GGQETTPLTAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRVATEL 180
Query: 181 ELQQAFHQGKYFAGIAKKLKGSA 203
ELQQAFHQGKYFAGIAKKLKGSA
Sbjct: 181 ELQQAFHQGKYFAGIAKKLKGSA 203
>Os05g0501300 Similar to Flavoprotein wrbA (Trp repressor binding protein)
Length = 205
Score = 317 bits (813), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 152/203 (74%), Positives = 171/203 (84%)
Query: 1 MAAKIYIVYYSMYGHVAKLAEEIEKGASSVEGVEVKLWQVPETLSDDVLTKMGAPSKKDV 60
MA K+Y+VYYSMYGHVAKLAEEI+KGASSVEGVEVK+WQVPETLS++VL KMGAP + D
Sbjct: 1 MAVKVYVVYYSMYGHVAKLAEEIKKGASSVEGVEVKIWQVPETLSEEVLGKMGAPPRSDA 60
Query: 61 PIITPAELAEADGVIFGFPTRFGMMAAQFKAFMDATGGLWRTQQLAGKPAGIFYXXXXXX 120
P+I P ELAEADGV+FGFPTRFGMMAAQ KAF DATGGLWR Q LAGKPAG+F+
Sbjct: 61 PVIAPQELAEADGVLFGFPTRFGMMAAQMKAFFDATGGLWREQSLAGKPAGVFFSTGTQG 120
Query: 121 XXXXXXPLTAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRVATEL 180
PLTA+TQL HHGM+FVPVGYTFGA MF+M V GGSPYG+GTFAGDGSR +E
Sbjct: 121 GGQETTPLTAVTQLAHHGMVFVPVGYTFGAKMFDMAAVHGGSPYGAGTFAGDGSRWPSEA 180
Query: 181 ELQQAFHQGKYFAGIAKKLKGSA 203
EL+ AFHQGKYFAGIAKKLKG++
Sbjct: 181 ELEHAFHQGKYFAGIAKKLKGAS 203
>Os01g0784800 Flavodoxin/nitric oxide synthase domain containing protein
Length = 203
Score = 315 bits (808), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 153/203 (75%), Positives = 169/203 (83%)
Query: 1 MAAKIYIVYYSMYGHVAKLAEEIEKGASSVEGVEVKLWQVPETLSDDVLTKMGAPSKKDV 60
MA K+Y+VYYSMYGHVAKLAEEI+KGASS+EGVE K+WQVPETL ++VL KMGAP K DV
Sbjct: 1 MAVKVYVVYYSMYGHVAKLAEEIKKGASSIEGVEAKIWQVPETLHEEVLGKMGAPPKPDV 60
Query: 61 PIITPAELAEADGVIFGFPTRFGMMAAQFKAFMDATGGLWRTQQLAGKPAGIFYXXXXXX 120
P ITP EL EADG++FGFPTRFGMMAAQ KAF DATGGLW Q LAGKPAGIF+
Sbjct: 61 PTITPQELTEADGILFGFPTRFGMMAAQMKAFFDATGGLWSEQSLAGKPAGIFFSTGTQG 120
Query: 121 XXXXXXPLTAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRVATEL 180
PLTAITQL HHGM+FVPVGYTFGA MF M +V+GGSPYG+GTFA DGSR TE+
Sbjct: 121 GGQETTPLTAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGSPYGAGTFAADGSRWPTEM 180
Query: 181 ELQQAFHQGKYFAGIAKKLKGSA 203
EL+ AFHQGKYFAGIAKKLKGSA
Sbjct: 181 ELEHAFHQGKYFAGIAKKLKGSA 203
>Os03g0748500 Flavodoxin/nitric oxide synthase domain containing protein
Length = 252
Score = 207 bits (526), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 132/203 (65%), Gaps = 7/203 (3%)
Query: 4 KIYIVYYSMYGHVAKLAEEIEKGASSVEGVEVKLWQVPETLSDDVLTKMGAPS------- 56
+IY+V+YSMYGHV LA + +G SV G L++VPETL VL +M A
Sbjct: 45 RIYVVFYSMYGHVRLLARAVARGVGSVPGARAILFRVPETLPPAVLARMEADDGGGGGDG 104
Query: 57 KKDVPIITPAELAEADGVIFGFPTRFGMMAAQFKAFMDATGGLWRTQQLAGKPAGIFYXX 116
+ +P++ P L +ADG +FGFP RFG M AQ +AF D+T L R Q+LAGKPAG+F
Sbjct: 105 EDVIPVVDPDGLPDADGFLFGFPARFGAMPAQMQAFFDSTVPLCRHQRLAGKPAGLFVST 164
Query: 117 XXXXXXXXXXPLTAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRV 176
TAITQL HHGM+FVP+GYTFG GM EM +++GGSPYG+G F+GDGSR
Sbjct: 165 GTQAGGQETTAWTAITQLAHHGMLFVPIGYTFGEGMLEMGELRGGSPYGAGVFSGDGSRP 224
Query: 177 ATELELQQAFHQGKYFAGIAKKL 199
+ELEL A H GKY A + KK+
Sbjct: 225 PSELELALAEHHGKYMATLVKKM 247
>Os10g0436800 Similar to 1,4-benzoquinone reductase
Length = 83
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 61/71 (85%)
Query: 129 TAITQLVHHGMIFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRVATELELQQAFHQ 188
TAITQ+VHHGM+FVP+GYTFG+GMF+M++++GGSPYG+G FAGDGSR +E EL A HQ
Sbjct: 10 TAITQIVHHGMLFVPIGYTFGSGMFKMDEIRGGSPYGAGVFAGDGSRQPSETELALAEHQ 69
Query: 189 GKYFAGIAKKL 199
GKY A I KKL
Sbjct: 70 GKYMASIVKKL 80
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,824,964
Number of extensions: 300158
Number of successful extensions: 646
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 5
Length of query: 203
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,023,257
Effective search space: 1286488499
Effective search space used: 1286488499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)