BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0380800 Os10g0380800|Os10g0380800
(526 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0380800 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.... 946 0.0
Os01g0770200 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.... 745 0.0
Os05g0510600 Similar to Tyrosine/dopa decarboxylase (EC 4.1... 588 e-168
Os07g0437500 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.25) 426 e-119
Os10g0400500 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.... 416 e-116
Os08g0140500 Similar to Tryptophan decarboxylase (EC 4.1.1.28) 384 e-107
Os08g0140300 Similar to Tryptophan decarboxylase 384 e-106
>Os10g0380800 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.25) (ELI5) (Fragment)
Length = 526
Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/526 (89%), Positives = 469/526 (89%)
Query: 1 MAPAPSHCHATNGNNGAIAASDTPVKTQHCARLLDADEFRRQGRLVVDLIADYYAGMGEY 60
MAPAPSHCHATNGNNGAIAASDTPVKTQHCARLLDADEFRRQGRLVVDLIADYYAGMGEY
Sbjct: 1 MAPAPSHCHATNGNNGAIAASDTPVKTQHCARLLDADEFRRQGRLVVDLIADYYAGMGEY 60
Query: 61 PVHPTVSPGFLRHRLPAEPPSRREPDAFAAAMQDVRDVILPGLTHWQSPRHFAHFPXXXX 120
PVHPTVSPGFLRHRLPAEPPSRREPDAFAAAMQDVRDVILPGLTHWQSPRHFAHFP
Sbjct: 61 PVHPTVSPGFLRHRLPAEPPSRREPDAFAAAMQDVRDVILPGLTHWQSPRHFAHFPASSS 120
Query: 121 XXXXXXXXXXXXINVVPFTWAASPAATELEMVVVDWLGKALHLPERLLFAXXXXXSILGT 180
INVVPFTWAASPAATELEMVVVDWLGKALHLPERLLFA SILGT
Sbjct: 121 TAGALGEALAAGINVVPFTWAASPAATELEMVVVDWLGKALHLPERLLFAGGGGGSILGT 180
Query: 181 TCEAILCALVAARDRKLAAIGEGRIGDLVVYCSDQTHFAFCKAARIAGIRREHCREIPTY 240
TCEAILCALVAARDRKLAAIGEGRIGDLVVYCSDQTHFAFCKAARIAGIRREHCREIPTY
Sbjct: 181 TCEAILCALVAARDRKLAAIGEGRIGDLVVYCSDQTHFAFCKAARIAGIRREHCREIPTY 240
Query: 241 RDDXXXXXXXXXXXXXXXXXXXGLVPLFVCATVGTTQTTAVDPVGELCAAAAPHGAWVHV 300
RDD GLVPLFVCATVGTTQTTAVDPVGELCAAAAPHGAWVHV
Sbjct: 241 RDDAFALSPAALRAAMRRDADAGLVPLFVCATVGTTQTTAVDPVGELCAAAAPHGAWVHV 300
Query: 301 DAAYAGSAMVCPELRGAVAGGVEAVDSFSMNAHKWLLANNDCCVMWVRTPSALVAALGTD 360
DAAYAGSAMVCPELRGAVAGGVEAVDSFSMNAHKWLLANNDCCVMWVRTPSALVAALGTD
Sbjct: 301 DAAYAGSAMVCPELRGAVAGGVEAVDSFSMNAHKWLLANNDCCVMWVRTPSALVAALGTD 360
Query: 361 QEYILKXXXXXXXXXXXXXXXXXYKDWGITLTRRFRALKLWLVLRCYGVEGLREHIRSHV 420
QEYILK YKDWGITLTRRFRALKLWLVLRCYGVEGLREHIRSHV
Sbjct: 361 QEYILKDAAAETAAADGGEGVVDYKDWGITLTRRFRALKLWLVLRCYGVEGLREHIRSHV 420
Query: 421 GMAAAFEGMVRADARFEVVTPRRFALVCFRLRSPNKKTANELNRRLLEEVNAASSGPYMS 480
GMAAAFEGMVRADARFEVVTPRRFALVCFRLRSPNKKTANELNRRLLEEVNAASSGPYMS
Sbjct: 421 GMAAAFEGMVRADARFEVVTPRRFALVCFRLRSPNKKTANELNRRLLEEVNAASSGPYMS 480
Query: 481 SANVGGVYMLRCAVGSTLTEERHVREAWKVVQDRATSILSKMEIIM 526
SANVGGVYMLRCAVGSTLTEERHVREAWKVVQDRATSILSKMEIIM
Sbjct: 481 SANVGGVYMLRCAVGSTLTEERHVREAWKVVQDRATSILSKMEIIM 526
>Os01g0770200 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.25) (ELI5) (Fragment)
Length = 533
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/539 (71%), Positives = 413/539 (76%), Gaps = 26/539 (4%)
Query: 1 MAPAPSHCHATNGN---NGAIAASDTPVKT---QHCARLLDADEFRRQGRLVVDLIADYY 54
MAP PSHCH NG NGAI +T T A LLDADEFRR G VVD IADYY
Sbjct: 1 MAP-PSHCHTINGGAPRNGAIPEVETTTSTPAASDTALLLDADEFRRLGHQVVDFIADYY 59
Query: 55 AGMGEYPVHPTVSPGFLRHRLPAEPPSRREPDAFAAAMQDVRDVILPGLTHWQSPRHFAH 114
AG+G+YPVHP+V+PGFLR +LPA+ PSR EP+AFAAA++DVRD+ILPG+THWQSPRHFAH
Sbjct: 60 AGLGDYPVHPSVTPGFLRRQLPADAPSRPEPEAFAAALRDVRDLILPGVTHWQSPRHFAH 119
Query: 115 FPXXXXXXXXXXXXXXXXINVVPFTWAASPAATELEMVVVDWLGKALHLPERLLFAXXXX 174
FP INVVPFTWAASPAATELEMVVVDWLG+ALHLPE LLFA
Sbjct: 120 FPASSSTVGALGEALAAGINVVPFTWAASPAATELEMVVVDWLGRALHLPESLLFAGGGG 179
Query: 175 XSILGTTCEAILCALVAARDRKLAAIGEGRIGDLVVYCSDQTHFAFCKAARIAGIRREHC 234
+ILGT+CEA+LCALVAARDRKLA IG RIGDLVVYCSDQTHFAF KAARIAGI REHC
Sbjct: 180 GTILGTSCEAVLCALVAARDRKLAEIGARRIGDLVVYCSDQTHFAFRKAARIAGIPREHC 239
Query: 235 REIPTYRDDXXXXXXXXXXXXXXXXXXXGLVPLFVCATVGTTQTTAVDPVGELCAAAAPH 294
REIPT RDD GLVPLF+CATVGTTQTTAVDPV ELCA AA H
Sbjct: 240 REIPTCRDDVFALSPTALHAAMQADVDAGLVPLFLCATVGTTQTTAVDPVRELCAVAARH 299
Query: 295 GA-WVHVDAAYAGSAMVCPELRGAVAGGVEAVDSFSMNAHKWLLANNDCCVMWVRTPSAL 353
G WVHVDAAYAGSA+VCPE R +AG EAVDS SMNAHKWLLANNDCC +WV PSAL
Sbjct: 300 GGVWVHVDAAYAGSALVCPEFRDVIAGA-EAVDSLSMNAHKWLLANNDCCAVWVAAPSAL 358
Query: 354 VAALGTDQEYILKXXXXXXXXXXXXXXXXXYKDWGITLTRRFRALKLWLVLRCYGVEGLR 413
VAALGT+QEYIL+ YKDWG TLTRRFRALK+WLVLRCYGVEGLR
Sbjct: 359 VAALGTEQEYILR------DAAAEGHDVVDYKDWGTTLTRRFRALKVWLVLRCYGVEGLR 412
Query: 414 EHIRSHVGMAAAFEGMVRADARFEVVTPRRFALVCFRLRSP-----------NKKTANEL 462
H+RSHV MAAAFE MVR DARFEVV PRRFALVCFRLRSP +K ANEL
Sbjct: 413 SHVRSHVAMAAAFEAMVRGDARFEVVAPRRFALVCFRLRSPPERLGVGVGVGGEKAANEL 472
Query: 463 NRRLLEEVNAASSGPYMSSANVGGVYMLRCAVGSTLTEERHVREAWKVVQDRATSILSK 521
NRRLLEEVNAASSGPYMSSA VGGVYMLRCA+GSTLTEERHVREAWKVVQ+RATSIL K
Sbjct: 473 NRRLLEEVNAASSGPYMSSAMVGGVYMLRCAIGSTLTEERHVREAWKVVQERATSILRK 531
>Os05g0510600 Similar to Tyrosine/dopa decarboxylase (EC 4.1.1.28)
Length = 565
Score = 588 bits (1517), Expect = e-168, Method: Compositional matrix adjust.
Identities = 312/496 (62%), Positives = 351/496 (70%), Gaps = 15/496 (3%)
Query: 32 RLLDADEFRRQGRLVVDLIADYYAGMGEYPVHPTVSPGFLRHRLPAEPPSRREPDAFAAA 91
R LDA EFRRQGR VVD IADYYAG+ +YPV P V+PGFL +LPA PS EPDA A
Sbjct: 23 RPLDAGEFRRQGRQVVDFIADYYAGINDYPVRPAVAPGFLAGKLPATAPSTPEPDALTAG 82
Query: 92 MQDVRDVILPGLTHWQSPRHFAHFPXXXXXXXXXXXXXXXXINVVPFTWAASPAATELEM 151
++DVR+++LPGLTHWQSPRHFAHF +NV PFTW ASPAATELE+
Sbjct: 83 LRDVRELMLPGLTHWQSPRHFAHFSATASNVGALGEALAAGLNVNPFTWEASPAATELEV 142
Query: 152 VVVDWLGKALHLPERLLFAXXXXXSILGTTCEAILCALVAARDRKLAAIGEGRIGDLVVY 211
VV DWLGKALHLPERLLFA ++LGT+CEA+LC +VAARD KLA IGE RIGDLVVY
Sbjct: 143 VVTDWLGKALHLPERLLFAGGGGGTLLGTSCEAMLCTIVAARDEKLAEIGEERIGDLVVY 202
Query: 212 CSDQTHFAFCKAARIAGIRREHCREIPTYRDDXXXXXXXXXXXXXXXXXXXGLVPLFVCA 271
CSDQTHF+F KAARIAGIRR +CREIPT R+ G VPLF+CA
Sbjct: 203 CSDQTHFSFQKAARIAGIRRGNCREIPTCRESGFVLTATALQAAVAADEAAGRVPLFLCA 262
Query: 272 TVGTTQTTAVDPVGELCAAAAPHGAWVHVDAAYAGSAMVCPELRGAVAGGVEAVDSFSMN 331
TVGTT T AVDP+ ELCAA G WVHVDAAYAG+A VCPE R A+AG EAVDSFS N
Sbjct: 263 TVGTTPTAAVDPLRELCAAVEGRGVWVHVDAAYAGAACVCPEFRHAIAGA-EAVDSFSTN 321
Query: 332 AHKWLLANNDCCVMWVRTPSALVAALGTDQEYILKXXXXXXXXXXXX---XXXXXYKDWG 388
HKWLLAN DCC +WV P+ALVAALGTD + ILK YKDW
Sbjct: 322 PHKWLLANMDCCALWVARPAALVAALGTDDDVILKDAAAAARPARGDHHHHAAVDYKDWQ 381
Query: 389 ITLTRRFRALKLWLVLRCYGVEGLREHIRSHVGMAAAFEGMVRADARFEVVTPRRFALVC 448
+ L+RRFRALKLWLVLRC+GV+GLR +RSHV MAAA + MVRADARFEV PR+FALVC
Sbjct: 382 VALSRRFRALKLWLVLRCHGVDGLRAVVRSHVRMAAALKRMVRADARFEVPVPRQFALVC 441
Query: 449 FRLRSPNK----------KTANELNRRLLEEVNAASSGPYMSSANVGGVYMLRCAVGSTL 498
FRLR +NELNRRLLE VNA YMSSA VGG+Y+LRCAVG++L
Sbjct: 442 FRLRGGGAAAQLVGGDELTASNELNRRLLEAVNATGRA-YMSSAVVGGMYVLRCAVGNSL 500
Query: 499 TEERHVREAWKVVQDR 514
TEE HVREAW VVQ +
Sbjct: 501 TEEHHVREAWSVVQGQ 516
>Os07g0437500 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.25)
Length = 497
Score = 426 bits (1095), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/493 (43%), Positives = 294/493 (59%), Gaps = 13/493 (2%)
Query: 32 RLLDADEFRRQGRLVVDLIADYYAGMGEYPVHPTVSPGFLRHRLPAEPPSRREPDAFAAA 91
R +DA++ R G +VD +ADYY + +PV V PG+L+ LP P R+PD +
Sbjct: 15 RPMDAEQLRECGHRMVDFVADYYKSIEAFPVLSQVQPGYLKEVLPDSAP--RQPDTLDSL 72
Query: 92 MQDVRDVILPGLTHWQSPRHFAHFPXXXXXXXXXXXXXXXXINVVPFTWAASPAATELEM 151
D++ I+PG+THWQSP +FA++P N+V F+W SPAATELE+
Sbjct: 73 FDDIQQKIIPGVTHWQSPNYFAYYPSNSSTAGFLGEMLSAAFNIVGFSWITSPAATELEV 132
Query: 152 VVVDWLGKALHLPERLLFAXXXXXSILGTTCEAILCALVAARDRKLAAIGEGRIGDLVVY 211
+V+DW K L LP + L I GT EA+L AL+AARDR L G+ + LVVY
Sbjct: 133 IVLDWFAKMLQLPSQFLSTALGGGVIQGTASEAVLVALLAARDRALKKHGKHSLEKLVVY 192
Query: 212 CSDQTHFAFCKAARIAGIRREHCREIPTYRDDXXXXXXXXXXXXXXXXXXXGLVPLFVCA 271
SDQTH A KA +IAGI E+ R + + GL+P F+CA
Sbjct: 193 ASDQTHSALQKACQIAGIFSENVRVVIADCNKNYAVAPEAVSEALSIDLSSGLIPFFICA 252
Query: 272 TVGTTQTTAVDPVGELCAAAAPHGAWVHVDAAYAGSAMVCPELRGAVAGGVEAVDSFSMN 331
TVGTT ++AVDP+ EL A + W H+DAAYAGSA +CPE R + GVE DSF+MN
Sbjct: 253 TVGTTSSSAVDPLPELGQIAKSNDMWFHIDAAYAGSACICPEYRHHL-NGVEEADSFNMN 311
Query: 332 AHKWLLANNDCCVMWVRTPSALVAALGTDQEYILKXXXXXXXXXXXXXXXXXYKDWGITL 391
AHKW L N DC ++WV+ S L+ +L T+ E++ +KDW I L
Sbjct: 312 AHKWFLTNFDCSLLWVKDRSFLIQSLSTNPEFL-------KNKASQANSVVDFKDWQIPL 364
Query: 392 TRRFRALKLWLVLRCYGVEGLREHIRSHVGMAAAFEGMVRADARFEVVTPRRFALVCFRL 451
RRFR+LKLW+VLR YGV+ L+ +IR H+ +A FE ++ +D+RFEVVTPR F+LVCFRL
Sbjct: 365 GRRFRSLKLWMVLRLYGVDNLQSYIRKHIHLAEHFEQLLLSDSRFEVVTPRTFSLVCFRL 424
Query: 452 RSPNKKTAN--ELNRRLLEEVNAASSGPYMSSANVGGVYMLRCAVGSTLTEERHVREAWK 509
P N +LN +++ VN +S ++S + G ++LR AVG+ LTEERHV AWK
Sbjct: 425 VPPTSDHENGRKLNYDMMDGVN-SSGKIFLSHTVLSGKFVLRFAVGAPLTEERHVDAAWK 483
Query: 510 VVQDRATSILSKM 522
+++D AT +L KM
Sbjct: 484 LLRDEATKVLGKM 496
>Os10g0400500 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.25) (ELI5) (Fragment)
Length = 492
Score = 416 bits (1069), Expect = e-116, Method: Compositional matrix adjust.
Identities = 234/487 (48%), Positives = 280/487 (57%), Gaps = 14/487 (2%)
Query: 34 LDADEFRRQGRLVVDLIADYYAGMGEYPVHPT-VSPGFLRHRLPAEPPSRREPDAFAAAM 92
LD D F VVD +A YY + +YPV + PG LR LP P EP +
Sbjct: 12 LDPDTFAADSSAVVDFLAGYYRDVDKYPVRAADLEPGRLRRLLPEAAPEFGEPAE--RIL 69
Query: 93 QDVRDVILPGLTHWQSPRHFAHFPXXXXXXXXXXXXXXXXINVVPFTWAASPAATELEMV 152
DVR +LPGLTHWQSP FA+FP +NVVPF W ASPAA ELE V
Sbjct: 70 ADVRRDVLPGLTHWQSPSFFAYFPMNASAAGFAGEMLSVGLNVVPFMWVASPAAVELEAV 129
Query: 153 VVDWLGKALHLPERLLFAXXXXXS-------ILGTTCEAILCALVAARDRKLAAIGEGRI 205
VVDW+ + + LP+R LF+ + G+TCEA++C L AARDR L IG I
Sbjct: 130 VVDWMARLVGLPDRFLFSGSGGGGGGGGGGVLQGSTCEAVVCTLAAARDRALGRIGHEGI 189
Query: 206 GDLVVYCSDQTHFAFCKAARIAGIRREHCREIPTYRDDXXXXXXXXXXXXXXXXXXXGLV 265
LVVY SDQTH F K AR+ GI + R +PT GLV
Sbjct: 190 VKLVVYASDQTHATFQKGARLVGITPANFRVVPTAAASGYALTGAAVRAAVEGDVARGLV 249
Query: 266 PLFVCATVGTTQTTAVDPVGELCAAAAPHGAWVHVDAAYAGSAMVCPELRGAVAGGVEAV 325
PL++CATVGTT AVDPV EL A HG W+HVDAAYAGSA +CPE +G + G E
Sbjct: 250 PLYLCATVGTTGIGAVDPVRELGEVARRHGMWLHVDAAYAGSAAICPEYQGYL-DGAELA 308
Query: 326 DSFSMNAHKWLLANNDCCVMWVRTPSALVAALGTDQEYILKXXXXXXXXXXXXXXXXXYK 385
DS SMN HKW L N DCC +WV +P+AL AAL TD EY LK YK
Sbjct: 309 DSVSMNPHKWFLTNMDCCCLWVASPAALTAALSTDPEY-LKNAGGGKPQAAAGAGAIDYK 367
Query: 386 DWGITLTRRFRALKLWLVLRCYGVEGLREHIRSHVGMAAAFEGMVRADARFEVVTPRRFA 445
DW I+L+RRFRA+KLW VLR YG G+R HIR HV MA FE V AD RFEVV RRF+
Sbjct: 368 DWQISLSRRFRAMKLWFVLRRYGAAGMRAHIRRHVAMAEWFERAVSADERFEVVAKRRFS 427
Query: 446 LVCFRLRSPNKKTANELNRRLLEEVNAASSGPYMSSANVGGVYMLRCAVGSTLTEERHVR 505
LVCFRLR + +NR LL VN AS +M+ V G +++R AVG +TE RHV
Sbjct: 428 LVCFRLRG-GGGGGDAMNRELLAAVN-ASGRAFMTHFVVEGKFVIRLAVGGAMTEMRHVG 485
Query: 506 EAWKVVQ 512
+AW++V+
Sbjct: 486 DAWELVR 492
>Os08g0140500 Similar to Tryptophan decarboxylase (EC 4.1.1.28)
Length = 523
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 221/507 (43%), Positives = 280/507 (55%), Gaps = 30/507 (5%)
Query: 32 RLLDADEFRRQGRLVVDLIADYYAGMGEYPVHPTVSPGFLRHRLPAEPPSRREPDAFAAA 91
R LDAD+ R VD + DYY + PV P V PG+L L + PPS P F A
Sbjct: 23 RPLDADDVRSYLHKAVDFVYDYYKSVESLPVLPGVEPGYLLRLLQSAPPSSSAP--FDIA 80
Query: 92 MQDVRDVILPGLTHWQSPRHFAHFPXXXXXXXXXXXXXXXXINVVPFTWAASPAATELEM 151
M+++R+ ++PG+THW SP FA FP +N V FTW A+PAATELE+
Sbjct: 81 MKELREAVVPGMTHWASPNFFAFFPATNSAAAIAGELIASAMNTVGFTWQAAPAATELEV 140
Query: 152 VVVDWLGKALHLPERLL------FAXXXXXSILGTTCEAILCALVAARD---RKLAAIGE 202
+ +DWL + L LP + ILGTT EA+L LVAARD R+ + G
Sbjct: 141 LALDWLAQLLGLPASFMNRTVAGGRGTGGGVILGTTSEAMLVTLVAARDAALRRSGSNGV 200
Query: 203 GRIGDLVVYCSDQTHFAFCKAARIAGIRREHCREIPTYRDDXXXXXXXXXXXXXXXXXXX 262
I L VY +DQTH F KA R+AG + R IPT +
Sbjct: 201 AGITRLTVYAADQTHSTFFKACRLAGFDPANIRSIPTGAETDYGLDPARLLEAMQADADA 260
Query: 263 GLVPLFVCATVGTTQTTAVDPVGELCAAAAPHGAWVHVDAAYAGSAMVCPELRGAVAGGV 322
GLVP +VCATVGTT + AVDPVG + AA AWVHVDAAYAGSA +CPE R + GV
Sbjct: 261 GLVPTYVCATVGTTSSNAVDPVGAVADVAARFAAWVHVDAAYAGSACICPEFRHHL-DGV 319
Query: 323 EAVDSFSMNAHKWLLANNDCCVMWVRTPSALVAALGTDQEYILKXXXXXXXXXXXXXXXX 382
E VDS SM+ HKWL+ DC ++VR L +L T+ EY+
Sbjct: 320 ERVDSISMSPHKWLMTCLDCTCLYVRDTHRLTGSLETNPEYL-------KNHASDSGEVT 372
Query: 383 XYKDWGITLTRRFRALKLWLVLRCYGVEGLREHIRSHVGMAAAFEGMVRADARFEVVTPR 442
KD + + RRFR LKLW+V+R YG L+EHIRS V MA FE +VR D RFEVV PR
Sbjct: 373 DLKDMQVGVGRRFRGLKLWMVMRTYGAGKLQEHIRSDVAMAKTFEDLVRGDDRFEVVVPR 432
Query: 443 RFALVCFRLRSPNKK---------TANELNRRLLEEVNAASSGPYMSSANVGGVYMLRCA 493
FALVCFR+R P K A + NR L+E +N Y++ VGG ++LR A
Sbjct: 433 NFALVCFRIR-PRKSGAAIAAGEAEAEKANRELMERLNKTGKA-YVAHTVVGGRFVLRFA 490
Query: 494 VGSTLTEERHVREAWKVVQDRATSILS 520
VGS+L EERHVR AW++++ T I++
Sbjct: 491 VGSSLQEERHVRSAWELIKKTTTEIVA 517
>Os08g0140300 Similar to Tryptophan decarboxylase
Length = 514
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 216/501 (43%), Positives = 282/501 (56%), Gaps = 25/501 (4%)
Query: 34 LDADEFRRQGRLVVDLIADYYAGMGEYPVHPTVSPGFLRHRLPAEPPSRREPDAFAAAMQ 93
L+AD+ R VD I+DYY + PV P V PG+L+ L A PP+ P F M+
Sbjct: 25 LNADDVRSYLHKAVDFISDYYKSVESMPVLPNVKPGYLQDELRASPPTYSAP--FDVTMK 82
Query: 94 DVRDVILPGLTHWQSPRHFAHFPXXXXXXXXXXXXXXXXINVVPFTWAASPAATELEMVV 153
++R ++PG+THW SP FA FP +N V FTW ASPAATE+E++
Sbjct: 83 ELRSSVVPGMTHWASPNFFAFFPSTNSAAAIAGDLIASAMNTVGFTWQASPAATEMEVLA 142
Query: 154 VDWLGKALHLPERLLFAXXXXXS-----ILGTTCEAILCALVAARD---RKLAAIGEGRI 205
+DWL + L+LP + ILGTT EA+L LVAARD R+ + G +
Sbjct: 143 LDWLAQMLNLPTSFMNRTGEGRGTGGGVILGTTSEAMLVTLVAARDAALRRSGSDGVAGL 202
Query: 206 GDLVVYCSDQTHFAFCKAARIAGIRREHCREIPTYRDDXXXXXXXXXXXXXXXXXXXGLV 265
L VY +DQTH F KA R+AG + R IPT + GLV
Sbjct: 203 HRLAVYAADQTHSTFFKACRLAGFDPANIRSIPTGAETDYGLDPARLLEAMQADADAGLV 262
Query: 266 PLFVCATVGTTQTTAVDPVGELCAAAAPHGAWVHVDAAYAGSAMVCPELRGAVAGGVEAV 325
P +VCATVGTT + AVDPVG + AA AWVHVDAAYAGSA +CPE R + GVE V
Sbjct: 263 PTYVCATVGTTSSNAVDPVGAVADVAARFAAWVHVDAAYAGSACICPEFRHHL-DGVERV 321
Query: 326 DSFSMNAHKWLLANNDCCVMWVRTPSALVAALGTDQEYILKXXXXXXXXXXXXXXXXXYK 385
DS SM+ HKWL+ DC ++VR L +L T+ EY+ K
Sbjct: 322 DSISMSPHKWLMTCLDCTCLYVRDTHRLTGSLETNPEYL-------KNHASDSGEVTDLK 374
Query: 386 DWGITLTRRFRALKLWLVLRCYGVEGLREHIRSHVGMAAAFEGMVRADARFEVVTPRRFA 445
D + + RRFR LKLW+V+R YGV L+EHIRS V MA FE +VR D RFEVV PR FA
Sbjct: 375 DMQVGVGRRFRGLKLWMVMRTYGVAKLQEHIRSDVAMAKVFEDLVRGDDRFEVVVPRNFA 434
Query: 446 LVCFRLR------SPNKKTANELNRRLLEEVNAASSGPYMSSANVGGVYMLRCAVGSTLT 499
LVCFR+R + ++ A+E NR L+E +N Y++ VGG ++LR AVGS+L
Sbjct: 435 LVCFRIRAGAGAAAATEEDADEANRELMERLNKTGKA-YVAHTVVGGRFVLRFAVGSSLQ 493
Query: 500 EERHVREAWKVVQDRATSILS 520
EE HVR AW++++ T +++
Sbjct: 494 EEHHVRSAWELIKKTTTEMMN 514
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,007,299
Number of extensions: 679345
Number of successful extensions: 2248
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2202
Number of HSP's successfully gapped: 7
Length of query: 526
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 421
Effective length of database: 11,553,331
Effective search space: 4863952351
Effective search space used: 4863952351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)