Os08g0140300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tryptophan decarboxylase.
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Os08g0140300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tryptophan decarboxylase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.62 | 0.296 | 3.08 | 0.2 | 0.319 | 0.212 | -1.52 | -1.35 | 0.032 | 11 | 0.39 | 60 | -- | -- |
| 40.9 | 0.3 | 3.09 | 0.117 | 0.27 | 0.153 | -0.0381 | -- | 0.0128 | 9.98 | 0.76 | 6 | -- | -- |
| 40.83 | 0.3 | 3.09 | 0.119 | 0.284 | 0.165 | -- | -0.132 | 0.0127 | 10.1 | 0.45 | 18 | -- | -- |
| 40.9 | 0.298 | 3.09 | 0.114 | 0.284 | 0.166 | -- | -- | 0.0107 | 10.1 | 0.7555 | 6 | -- | -- |
| 42.21 | 0.304 | 3.1 | 0.113 | -- | -0.0484 | -- | 0.0177 | 0.0156 | -- | 9.24 | 23 | -- | -- |
| 41.54 | 0.302 | 3.09 | 0.109 | 0.127 | -- | -0.144 | -- | 0.00888 | 7.54 | -- | -- | -- | -- |
| 41.59 | 0.302 | 3.09 | 0.105 | 0.126 | -- | -- | -- | 0.00925 | 7.73 | -- | -- | -- | -- |
| 42.19 | 0.303 | 3.1 | 0.112 | -- | -0.0512 | -- | -- | 0.0153 | -- | 9.623 | 7 | -- | -- |
| 41.25 | 0.301 | 3.09 | -- | 0.264 | 0.148 | -- | -- | -0.000178 | 9.92 | 0.7599 | 6 | -- | -- |
| 42.46 | 0.304 | 3.1 | 0.107 | -- | -- | -- | -- | 0.0111 | -- | -- | -- | -- | -- |
| 41.88 | 0.303 | 3.1 | -- | 0.127 | -- | -- | -- | -0.00248 | 7.68 | -- | -- | -- | -- |
| 42.52 | 0.304 | 3.1 | -- | -- | -0.048 | -- | -- | 0.00271 | -- | 9.308 | 9 | -- | -- |
| 42.76 | 0.305 | 3.1 | -- | -- | -- | -- | -- | -0.000799 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.81 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 4 | 36.31 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 2 |
| 9 | 36.68 | wind | 5.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 11 | 36.68 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 14 | 36.70 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 16 | 36.71 | wind | 7.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 20 | 36.74 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 22 | 36.74 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 23 | 36.74 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 27 | 36.74 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 28 | 36.74 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 30 | 36.74 | radiation | 1.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 35 | 36.74 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 37 | 36.74 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 44 | 36.76 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 1 |
| 45 | 36.76 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 46 | 36.80 | wind | 1.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 47 | 36.80 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 57 | 36.88 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 59 | 36.88 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 92 | 36.92 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 97 | 36.94 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 3 | 1 |
| 108 | 36.97 | wind | 1.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 121 | 37.06 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 124 | 37.06 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 127 | 37.06 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 131 | 37.06 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 140 | 37.06 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 141 | 37.06 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 142 | 37.06 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 151 | 37.06 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 162 | 37.19 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 169 | 37.31 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 23 |
| 171 | 37.31 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 183 | 37.58 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 221 | 38.81 | humidity | 50.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 239 | 39.06 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 243 | 39.11 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 247 | 39.12 | radiation | 1.0 | 10 | < th | dose independent | rect. | 4 | 10 |
| 253 | 39.16 | wind | 1.0 | 10 | > th | dose independent | rect. | 2 | 3 |
| 256 | 39.19 | radiation | 1.0 | 10 | < th | dose independent | rect. | 4 | 4 |
| 283 | 39.31 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 343 | 39.45 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 359 | 39.51 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 5 | 4 |
| 361 | 39.52 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 364 | 39.52 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 382 | 39.60 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 383 | 39.61 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 396 | 39.64 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 402 | 39.68 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 404 | 39.68 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 406 | 39.68 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 23 |
| 408 | 39.68 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 12 | 17 |
| 409 | 39.68 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 413 | 39.69 | radiation | 1.0 | 90 | < th | dose independent | rect. | 13 | 16 |
| 451 | 39.73 | radiation | 1.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 463 | 39.74 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 19 |
| 471 | 39.75 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 473 | 39.75 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 1 | 8 |
| 478 | 39.75 | radiation | 1.0 | 30 | < th | dose dependent | no | NA | NA |
| 488 | 39.75 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 489 | 39.75 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 504 | 39.78 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 625 | 39.84 | radiation | 1.0 | 30 | < th | dose dependent | sin | 2 | NA |
| 631 | 39.85 | humidity | 90.0 | 270 | < th | dose independent | rect. | 1 | 1 |
| 648 | 39.86 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 22 |
| 656 | 39.88 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 681 | 39.88 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 694 | 39.88 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 713 | 39.90 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 778 | 39.90 | radiation | 1.0 | 90 | > th | dose independent | rect. | 16 | 23 |
| 792 | 39.91 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 793 | 39.91 | humidity | 90.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 805 | 39.92 | radiation | 1.0 | 30 | < th | dose independent | no | NA | NA |
| 813 | 39.92 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 19 |
| 829 | 39.92 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 830 | 39.92 | radiation | 1.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 831 | 39.92 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 837 | 39.93 | radiation | 1.0 | 30 | > th | dose independent | no | NA | NA |
| 838 | 39.93 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 843 | 39.93 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 14 |