FiT-DB / Search/ Help/ Sample detail

Os07g0437500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tyrosine decarboxylase 1 (EC 4.1.1.25).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.28 (0.0213) R2 : 0.662
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.869 (0.0526) R2dC : 0.191 R2C : 0.178
β3 : -1.64 (0.0697) R2dE : 0.42 R2E : 0.446
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.198 (0.0462) R2dN8 : 0.0191 R2N8 : 0.0579
σ : 0.396
deviance : 72.42
__
_____
C
peak time of C : 21
E
wheather : temperature
threshold : 17.3
memory length : 28389
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.24 0.382 8.32 -1.02 0.94 -0.78 0.248 1 -0.428 21 20.59 714 -- --
68.8 0.386 8.35 -1.14 0.864 -0.864 0.497 -- -0.464 21.1 20.9 1171 -- --
66.33 0.379 8.31 -0.989 0.947 -0.754 -- 1.12 -0.414 20.9 20.71 716 -- --
67.07 0.381 8.36 -1.11 0.898 -1.07 -- -- -0.477 21.2 19.2 2457 -- --
106.64 0.481 8.29 -0.807 -- -1.05 -- 0.768 -0.427 -- 19.5 2884 -- --
91.54 0.449 8.38 -1.52 0.826 -- 0.556 -- -0.664 21 -- -- -- --
92.5 0.45 8.38 -1.54 0.83 -- -- -- -0.663 20.8 -- -- -- --
104.79 0.477 8.3 -0.869 -- -1.41 -- -- -0.395 -- 18.6 2922 -- --
72.42 0.396 8.28 -- 0.869 -1.64 -- -- -0.198 21 17.3 28389 -- --
131.64 0.536 8.36 -1.54 -- -- -- -- -0.669 -- -- -- -- --
154.73 0.582 8.35 -- 0.834 -- -- -- -0.492 20.7 -- -- -- --
112.39 0.494 8.26 -- -- -1.58 -- -- -0.218 -- 17 28831 -- --
193.98 0.65 8.32 -- -- -- -- -- -0.499 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 63.17 temperature 20 720 > th dose independent rect. 12 19
19 65.15 temperature 20 720 > th dose independent sin 14 NA
37 66.16 humidity 80 43200 < th dose independent rect. 6 1
38 66.16 temperature 20 720 > th dose independent rect. 19 12
44 66.35 temperature 20 1440 < th dose dependent rect. 3 2
54 66.55 temperature 20 1440 < th dose dependent rect. 23 7
61 66.66 humidity 80 43200 > th dose independent rect. 6 1
74 66.84 humidity 60 43200 < th dose independent rect. 20 14
77 66.86 humidity 60 43200 < th dose dependent rect. 19 15
84 66.95 temperature 20 14400 < th dose independent rect. 21 1
93 67.09 temperature 20 4320 > th dose independent rect. 18 5
94 67.10 temperature 20 14400 > th dose independent rect. 21 1
96 67.12 humidity 60 43200 > th dose independent rect. 20 14
97 67.12 humidity 50 43200 > th dose dependent rect. 19 2
111 67.26 humidity 60 43200 < th dose independent rect. 7 2
115 67.27 temperature 20 1440 < th dose independent rect. 22 16
118 67.30 temperature 20 4320 < th dose independent rect. 18 5
139 67.42 humidity 90 43200 < th dose dependent rect. 19 2
144 67.45 humidity 60 43200 < th dose dependent rect. 7 2
152 67.51 temperature 20 720 > th dose independent rect. 19 23
158 67.55 temperature 20 4320 < th dose independent rect. 18 1
160 67.55 humidity 50 43200 < th dose dependent rect. 13 2
162 67.56 temperature 20 1440 > th dose independent rect. 22 16
166 67.57 temperature 20 720 < th dose independent rect. 9 22
176 67.60 temperature 20 720 > th dose independent rect. 4 23
178 67.61 temperature 20 720 > th dose independent rect. 19 7
185 67.63 temperature 20 1440 < th dose independent rect. 5 2
190 67.66 humidity 60 43200 > th dose independent rect. 8 1
205 67.69 temperature 20 1440 < th dose independent sin 5 NA
227 67.74 humidity 80 43200 < th dose independent rect. 5 4
230 67.75 temperature 20 1440 < th dose independent rect. 22 2
231 67.75 temperature 20 720 < th dose independent rect. 21 23
232 67.75 temperature 15 720 > th dose dependent rect. 19 12
234 67.75 humidity 50 43200 < th dose dependent rect. 13 20
237 67.76 wind 1 43200 > th dose independent rect. 23 3
248 67.77 temperature 20 1440 < th dose dependent sin 10 NA
257 67.81 temperature 20 720 > th dose independent no NA NA
264 67.82 humidity 90 14400 > th dose dependent rect. 5 1
265 67.83 temperature 20 1440 > th dose independent sin 5 NA
309 67.90 humidity 50 43200 < th dose dependent rect. 13 9
317 67.91 humidity 50 43200 > th dose independent sin 9 NA
332 67.94 humidity 50 43200 > th dose independent rect. 19 17
336 67.95 temperature 20 720 < th dose independent no NA NA
337 67.95 radiation 20 14400 > th dose independent rect. 6 1
349 67.95 temperature 20 1440 < th dose independent rect. 1 13
365 67.97 humidity 60 43200 < th dose independent rect. 4 6
394 68.01 temperature 20 1440 > th dose independent rect. 1 13
399 68.02 temperature 20 720 < th dose independent rect. 17 23
404 68.03 humidity 50 43200 < th dose independent rect. 13 20
414 68.04 temperature 20 720 < th dose independent rect. 14 23
420 68.05 wind 1 43200 < th dose independent rect. 24 2
429 68.06 temperature 20 1440 > th dose independent rect. 5 2
432 68.06 humidity 50 43200 > th dose independent rect. 19 21
461 68.09 humidity 50 43200 < th dose independent sin 8 NA
468 68.09 humidity 50 43200 < th dose dependent rect. 19 21
496 68.11 humidity 50 43200 < th dose dependent rect. 16 23
498 68.12 temperature 20 1440 < th dose independent rect. 3 8
500 68.12 humidity 50 43200 < th dose independent rect. 19 21
525 68.13 humidity 50 43200 < th dose dependent sin 18 NA
529 68.13 humidity 50 43200 < th dose dependent no NA NA
533 68.13 humidity 50 43200 < th dose dependent rect. 6 10
548 68.13 humidity 50 43200 < th dose dependent rect. 6 16
648 68.15 temperature 20 720 < th dose independent rect. 1 23
681 68.16 temperature 10 720 > th dose dependent rect. 12 19
760 68.20 humidity 50 43200 > th dose independent rect. 13 20
807 68.22 humidity 50 43200 < th dose independent rect. 11 22
810 68.22 humidity 50 43200 < th dose independent rect. 13 23
823 68.23 humidity 80 43200 < th dose independent rect. 17 16
865 68.26 wind 9 43200 > th dose independent rect. 9 6
885 68.28 temperature 20 1440 > th dose independent rect. 3 8
899 68.29 wind 1 14400 < th dose independent rect. 22 4
936 68.31 humidity 80 43200 > th dose independent rect. 18 7
949 68.32 humidity 80 43200 < th dose independent rect. 18 7
957 68.32 humidity 60 43200 < th dose dependent sin 9 NA
975 68.34 humidity 80 43200 > th dose independent rect. 17 9
994 68.36 humidity 50 43200 < th dose independent no NA NA
996 68.36 temperature 20 1440 > th dose independent rect. 5 5