Os08g0140500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tryptophan decarboxylase (EC 4.1.1.28).
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Os08g0140500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tryptophan decarboxylase (EC 4.1.1.28).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 249.36 | 0.742 | 7.75 | 3.28 | 2.22 | 1.8 | -0.658 | 3.31 | 1.37 | 6.35 | 1.173 | 4340 | -- | -- |
| 276.52 | 0.774 | 7.76 | 3.27 | 2.28 | 1.66 | -0.992 | -- | 1.36 | 6 | 1.519 | 4417 | -- | -- |
| 250.37 | 0.737 | 7.75 | 3.26 | 2.22 | 1.81 | -- | 3.32 | 1.38 | 6.32 | 1.172 | 4347 | -- | -- |
| 264.96 | 0.758 | 7.76 | 2.64 | 2.25 | 1.54 | -- | -- | 1.3 | 6.12 | 1.56 | 4394 | -- | -- |
| 507.1 | 1.05 | 7.75 | 3.26 | -- | 2.01 | -- | 3.32 | 1.38 | -- | 1.172 | 4347 | -- | -- |
| 312.37 | 0.829 | 7.74 | 2.9 | 2.26 | -- | -0.539 | -- | 1.59 | 6.38 | -- | -- | -- | -- |
| 313.09 | 0.829 | 7.74 | 2.9 | 2.26 | -- | -- | -- | 1.59 | 6.38 | -- | -- | -- | -- |
| 521.42 | 1.06 | 7.88 | 2.69 | -- | 1.57 | -- | -- | 1.22 | -- | 1.83 | 4354 | -- | -- |
| 275.38 | 0.773 | 7.86 | -- | 2.38 | 2.57 | -- | -- | 0.488 | 6.61 | 0.08566 | 47138 | -- | -- |
| 578.39 | 1.12 | 7.78 | 2.96 | -- | -- | -- | -- | 1.64 | -- | -- | -- | -- | -- |
| 534.38 | 1.08 | 7.81 | -- | 2.3 | -- | -- | -- | 1.27 | 6.31 | -- | -- | -- | -- |
| 531.27 | 1.07 | 8.04 | -- | -- | 2.57 | -- | -- | 0.493 | -- | 0.3615 | 47520 | -- | -- |
| 808.94 | 1.33 | 7.86 | -- | -- | -- | -- | -- | 1.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 234.84 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 3 | 234.98 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 7 | 235.60 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 8 | 235.81 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 18 | 236.05 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 54 | 236.61 | temperature | 25 | 14400 | > th | dose dependent | sin | 4 | NA |
| 253 | 237.65 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 255 | 237.68 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 461 | 239.49 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 465 | 239.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 507 | 240.08 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 515 | 240.17 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 622 | 241.00 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 21 |
| 712 | 241.56 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 21 |
| 718 | 241.61 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 728 | 241.65 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 729 | 241.66 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 730 | 241.66 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 16 |
| 735 | 241.67 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 14 |
| 773 | 241.83 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 780 | 241.87 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 783 | 241.89 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 823 | 241.97 | temperature | 25 | 14400 | > th | dose independent | sin | 6 | NA |
| 827 | 241.98 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 16 |
| 846 | 242.01 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 12 |
| 852 | 242.02 | temperature | 25 | 14400 | < th | dose independent | sin | 6 | NA |
| 991 | 242.31 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |