BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0140500 Os08g0140500|Os08g0140500
(523 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0140500 Similar to Tryptophan decarboxylase (EC 4.1.1.28) 843 0.0
Os08g0140300 Similar to Tryptophan decarboxylase 753 0.0
Os07g0437500 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.25) 429 e-120
Os10g0400500 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.... 367 e-102
Os01g0770200 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.... 355 6e-98
Os10g0380800 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.... 345 4e-95
Os05g0510600 Similar to Tyrosine/dopa decarboxylase (EC 4.1... 323 2e-88
>Os08g0140500 Similar to Tryptophan decarboxylase (EC 4.1.1.28)
Length = 523
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/523 (80%), Positives = 422/523 (80%)
Query: 1 MGSLDXXXXXXXXXXXXDVEPFRPLDADDVRSYLHKAVDFVYDYYKSVESLPVLPGVEPG 60
MGSLD DVEPFRPLDADDVRSYLHKAVDFVYDYYKSVESLPVLPGVEPG
Sbjct: 1 MGSLDANPAAAYAAFAADVEPFRPLDADDVRSYLHKAVDFVYDYYKSVESLPVLPGVEPG 60
Query: 61 YLLRLLQXXXXXXXXXFDIAMKELREAVVPGMTHWASPNFFAFFPATNXXXXXXXXXXXX 120
YLLRLLQ FDIAMKELREAVVPGMTHWASPNFFAFFPATN
Sbjct: 61 YLLRLLQSAPPSSSAPFDIAMKELREAVVPGMTHWASPNFFAFFPATNSAAAIAGELIAS 120
Query: 121 XMNTVGFTWQAAPAATEXXXXXXXXXXXXXXXXXSFMNXXXXXXXXXXXXXXXXXXSEAM 180
MNTVGFTWQAAPAATE SFMN SEAM
Sbjct: 121 AMNTVGFTWQAAPAATELEVLALDWLAQLLGLPASFMNRTVAGGRGTGGGVILGTTSEAM 180
Query: 181 LVTLVAARDAALRRSGSNGVAGITRLTVYAADQTHSTFFKACRLAGFDPANIRSIPTGAE 240
LVTLVAARDAALRRSGSNGVAGITRLTVYAADQTHSTFFKACRLAGFDPANIRSIPTGAE
Sbjct: 181 LVTLVAARDAALRRSGSNGVAGITRLTVYAADQTHSTFFKACRLAGFDPANIRSIPTGAE 240
Query: 241 TDYGLDPARLLEAMQADADAGLVPTYVCATVGTTSSNXXXXXXXXXXXXXXXXXXXHVDA 300
TDYGLDPARLLEAMQADADAGLVPTYVCATVGTTSSN HVDA
Sbjct: 241 TDYGLDPARLLEAMQADADAGLVPTYVCATVGTTSSNAVDPVGAVADVAARFAAWVHVDA 300
Query: 301 AYAGSACICPEFRHHLDGVERVDSISMSPHKWLMTCLDCTCLYVRDTHRLTGSLETNPEY 360
AYAGSACICPEFRHHLDGVERVDSISMSPHKWLMTCLDCTCLYVRDTHRLTGSLETNPEY
Sbjct: 301 AYAGSACICPEFRHHLDGVERVDSISMSPHKWLMTCLDCTCLYVRDTHRLTGSLETNPEY 360
Query: 361 LKNHASDSGEVTDLKDMQVGVGRRFRGLKLWMVMRTYGAGKLQEHIRSDVAMAKTFEDLV 420
LKNHASDSGEVTDLKDMQVGVGRRFRGLKLWMVMRTYGAGKLQEHIRSDVAMAKTFEDLV
Sbjct: 361 LKNHASDSGEVTDLKDMQVGVGRRFRGLKLWMVMRTYGAGKLQEHIRSDVAMAKTFEDLV 420
Query: 421 RGDDRFEVVVPRNFALVCFRIRPRKSGXXXXXXXXXXXXXNRELMERLNKTGKAYVAHTV 480
RGDDRFEVVVPRNFALVCFRIRPRKSG NRELMERLNKTGKAYVAHTV
Sbjct: 421 RGDDRFEVVVPRNFALVCFRIRPRKSGAAIAAGEAEAEKANRELMERLNKTGKAYVAHTV 480
Query: 481 VGGRFVLRFAVGSSLQEERHVRSAWELIKKTTTEIVADAGEDK 523
VGGRFVLRFAVGSSLQEERHVRSAWELIKKTTTEIVADAGEDK
Sbjct: 481 VGGRFVLRFAVGSSLQEERHVRSAWELIKKTTTEIVADAGEDK 523
>Os08g0140300 Similar to Tryptophan decarboxylase
Length = 514
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/516 (73%), Positives = 395/516 (76%), Gaps = 3/516 (0%)
Query: 1 MGSLDXXXXXXXXXXXXDVEPFRPLDADDVRSYLHKAVDFVYDYYKSVESLPVLPGVEPG 60
MGSLD + E F+PL+ADDVRSYLHKAVDF+ DYYKSVES+PVLP V+PG
Sbjct: 1 MGSLDTNPTAFSAFPAGEGETFQPLNADDVRSYLHKAVDFISDYYKSVESMPVLPNVKPG 60
Query: 61 YLLRLLQXXXXXXXXXFDIAMKELREAVVPGMTHWASPNFFAFFPATNXXXXXXXXXXXX 120
YL L+ FD+ MKELR +VVPGMTHWASPNFFAFFP+TN
Sbjct: 61 YLQDELRASPPTYSAPFDVTMKELRSSVVPGMTHWASPNFFAFFPSTNSAAAIAGDLIAS 120
Query: 121 XMNTVGFTWQAAPAATEXXXXXXXXXXXXXXXXXSFMNXXXXXXXXXXXXXXXXXXSEAM 180
MNTVGFTWQA+PAATE SFMN SEAM
Sbjct: 121 AMNTVGFTWQASPAATEMEVLALDWLAQMLNLPTSFMNRTGEGRGTGGGVILGTT-SEAM 179
Query: 181 LVTLVAARDAALRRSGSNGVAGITRLTVYAADQTHSTFFKACRLAGFDPANIRSIPTGAE 240
LVTLVAARDAALRRSGS+GVAG+ RL VYAADQTHSTFFKACRLAGFDPANIRSIPTGAE
Sbjct: 180 LVTLVAARDAALRRSGSDGVAGLHRLAVYAADQTHSTFFKACRLAGFDPANIRSIPTGAE 239
Query: 241 TDYGLDPARLLEAMQADADAGLVPTYVCATVGTTSSNXXXXXXXXXXXXXXXXXXXHVDA 300
TDYGLDPARLLEAMQADADAGLVPTYVCATVGTTSSN HVDA
Sbjct: 240 TDYGLDPARLLEAMQADADAGLVPTYVCATVGTTSSNAVDPVGAVADVAARFAAWVHVDA 299
Query: 301 AYAGSACICPEFRHHLDGVERVDSISMSPHKWLMTCLDCTCLYVRDTHRLTGSLETNPEY 360
AYAGSACICPEFRHHLDGVERVDSISMSPHKWLMTCLDCTCLYVRDTHRLTGSLETNPEY
Sbjct: 300 AYAGSACICPEFRHHLDGVERVDSISMSPHKWLMTCLDCTCLYVRDTHRLTGSLETNPEY 359
Query: 361 LKNHASDSGEVTDLKDMQVGVGRRFRGLKLWMVMRTYGAGKLQEHIRSDVAMAKTFEDLV 420
LKNHASDSGEVTDLKDMQVGVGRRFRGLKLWMVMRTYG KLQEHIRSDVAMAK FEDLV
Sbjct: 360 LKNHASDSGEVTDLKDMQVGVGRRFRGLKLWMVMRTYGVAKLQEHIRSDVAMAKVFEDLV 419
Query: 421 RGDDRFEVVVPRNFALVCFRIRPRKSGXXXXXXXXXXXXXNRELMERLNKTGKAYVAHTV 480
RGDDRFEVVVPRNFALVCFRI R NRELMERLNKTGKAYVAHTV
Sbjct: 420 RGDDRFEVVVPRNFALVCFRI--RAGAGAAAATEEDADEANRELMERLNKTGKAYVAHTV 477
Query: 481 VGGRFVLRFAVGSSLQEERHVRSAWELIKKTTTEIV 516
VGGRFVLRFAVGSSLQEE HVRSAWELIKKTTTE++
Sbjct: 478 VGGRFVLRFAVGSSLQEEHHVRSAWELIKKTTTEMM 513
>Os07g0437500 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.25)
Length = 497
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/495 (42%), Positives = 293/495 (59%), Gaps = 15/495 (3%)
Query: 22 FRPLDADDVRSYLHKAVDFVYDYYKSVESLPVLPGVEPGYLLRLLQXXXXXXXXXFDIAM 81
RP+DA+ +R H+ VDFV DYYKS+E+ PVL V+PGYL +L D
Sbjct: 14 LRPMDAEQLRECGHRMVDFVADYYKSIEAFPVLSQVQPGYLKEVLPDSAPRQPDTLDSLF 73
Query: 82 KELREAVVPGMTHWASPNFFAFFPATNXXXXXXXXXXXXXMNTVGFTWQAAPAATEXXXX 141
++++ ++PG+THW SPN+FA++P+ + N VGF+W +PAATE
Sbjct: 74 DDIQQKIIPGVTHWQSPNYFAYYPSNSSTAGFLGEMLSAAFNIVGFSWITSPAATELEVI 133
Query: 142 XXXXXXXXXXXXXSFMNXXXXXXXXXXXXXXXXXXSEAMLVTLVAARDAALRRSGSNGVA 201
F++ SEA+LV L+AARD AL++ G +
Sbjct: 134 VLDWFAKMLQLPSQFLSTALGGGVIQGTA------SEAVLVALLAARDRALKKHGKHS-- 185
Query: 202 GITRLTVYAADQTHSTFFKACRLAGFDPANIRSIPTGAETDYGLDPARLLEAMQADADAG 261
+ +L VYA+DQTHS KAC++AG N+R + +Y + P + EA+ D +G
Sbjct: 186 -LEKLVVYASDQTHSALQKACQIAGIFSENVRVVIADCNKNYAVAPEAVSEALSIDLSSG 244
Query: 262 LVPTYVCATVGTTSSNXXXXXXXXXXXXXXXXXXXHVDAAYAGSACICPEFRHHLDGVER 321
L+P ++CATVGTTSS+ H+DAAYAGSACICPE+RHHL+GVE
Sbjct: 245 LIPFFICATVGTTSSSAVDPLPELGQIAKSNDMWFHIDAAYAGSACICPEYRHHLNGVEE 304
Query: 322 VDSISMSPHKWLMTCLDCTCLYVRDTHRLTGSLETNPEYLKNHASDSGEVTDLKDMQVGV 381
DS +M+ HKW +T DC+ L+V+D L SL TNPE+LKN AS + V D KD Q+ +
Sbjct: 305 ADSFNMNAHKWFLTNFDCSLLWVKDRSFLIQSLSTNPEFLKNKASQANSVVDFKDWQIPL 364
Query: 382 GRRFRGLKLWMVMRTYGAGKLQEHIRSDVAMAKTFEDLVRGDDRFEVVVPRNFALVCFRI 441
GRRFR LKLWMV+R YG LQ +IR + +A+ FE L+ D RFEVV PR F+LVCFR+
Sbjct: 365 GRRFRSLKLWMVLRLYGVDNLQSYIRKHIHLAEHFEQLLLSDSRFEVVTPRTFSLVCFRL 424
Query: 442 RPRKSGXXXXXXXXXXXXXNRELMERLNKTGKAYVAHTVVGGRFVLRFAVGSSLQEERHV 501
P S N ++M+ +N +GK +++HTV+ G+FVLRFAVG+ L EERHV
Sbjct: 425 VPPTSD------HENGRKLNYDMMDGVNSSGKIFLSHTVLSGKFVLRFAVGAPLTEERHV 478
Query: 502 RSAWELIKKTTTEIV 516
+AW+L++ T+++
Sbjct: 479 DAAWKLLRDEATKVL 493
>Os10g0400500 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.25) (ELI5) (Fragment)
Length = 492
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/499 (40%), Positives = 267/499 (53%), Gaps = 20/499 (4%)
Query: 19 VEPFRPLDADDVRSYLHKAVDFVYDYYKSVESLPVLPG-VEPGYLLRLLQXXXXXXXXXF 77
++ +PLD D + VDF+ YY+ V+ PV +EPG L RLL
Sbjct: 6 LDALQPLDPDTFAADSSAVVDFLAGYYRDVDKYPVRAADLEPGRLRRLLPEAAPEFGEPA 65
Query: 78 DIAMKELREAVVPGMTHWASPNFFAFFPATNXXXXXXXXXXXXXMNTVGFTWQAAPAATE 137
+ + ++R V+PG+THW SP+FFA+FP +N V F W A+PAA E
Sbjct: 66 ERILADVRRDVLPGLTHWQSPSFFAYFPMNASAAGFAGEMLSVGLNVVPFMWVASPAAVE 125
Query: 138 XXXXXXXXXXXXXXXXXSFM-NXXXXXXXXXXXXXXXXXXSEAMLVTLVAARDAALRRSG 196
F+ + EA++ TL AARD AL R G
Sbjct: 126 LEAVVVDWMARLVGLPDRFLFSGSGGGGGGGGGGVLQGSTCEAVVCTLAAARDRALGRIG 185
Query: 197 SNGVAGITRLTVYAADQTHSTFFKACRLAGFDPANIRSIPTGAETDYGLDPARLLEAMQA 256
GI +L VYA+DQTH+TF K RL G PAN R +PT A + Y L A + A++
Sbjct: 186 HE---GIVKLVVYASDQTHATFQKGARLVGITPANFRVVPTAAASGYALTGAAVRAAVEG 242
Query: 257 DADAGLVPTYVCATVGTTSSNXXXXXXXXXXXXXXXXXXXHVDAAYAGSACICPEFRHHL 316
D GLVP Y+CATVGTT HVDAAYAGSA ICPE++ +L
Sbjct: 243 DVARGLVPLYLCATVGTTGIGAVDPVRELGEVARRHGMWLHVDAAYAGSAAICPEYQGYL 302
Query: 317 DGVERVDSISMSPHKWLMTCLDCTCLYVRDTHRLTGSLETNPEYLKN------HASDSGE 370
DG E DS+SM+PHKW +T +DC CL+V LT +L T+PEYLKN A+
Sbjct: 303 DGAELADSVSMNPHKWFLTNMDCCCLWVASPAALTAALSTDPEYLKNAGGGKPQAAAGAG 362
Query: 371 VTDLKDMQVGVGRRFRGLKLWMVMRTYGAGKLQEHIRSDVAMAKTFEDLVRGDDRFEVVV 430
D KD Q+ + RRFR +KLW V+R YGA ++ HIR VAMA+ FE V D+RFEVV
Sbjct: 363 AIDYKDWQISLSRRFRAMKLWFVLRRYGAAGMRAHIRRHVAMAEWFERAVSADERFEVVA 422
Query: 431 PRNFALVCFRIRPRKSGXXXXXXXXXXXXXNRELMERLNKTGKAYVAHTVVGGRFVLRFA 490
R F+LVCFR+R NREL+ +N +G+A++ H VV G+FV+R A
Sbjct: 423 KRRFSLVCFRLRGGGG---------GGDAMNRELLAAVNASGRAFMTHFVVEGKFVIRLA 473
Query: 491 VGSSLQEERHVRSAWELIK 509
VG ++ E RHV AWEL++
Sbjct: 474 VGGAMTEMRHVGDAWELVR 492
>Os01g0770200 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.25) (ELI5) (Fragment)
Length = 533
Score = 355 bits (910), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 205/504 (40%), Positives = 269/504 (53%), Gaps = 17/504 (3%)
Query: 25 LDADDVRSYLHKAVDFVYDYYKSVESLPVLPGVEPGYLLRLLQXXXXX--XXXXFDIAMK 82
LDAD+ R H+ VDF+ DYY + PV P V PG+L R L F A++
Sbjct: 39 LDADEFRRLGHQVVDFIADYYAGLGDYPVHPSVTPGFLRRQLPADAPSRPEPEAFAAALR 98
Query: 83 ELREAVVPGMTHWASPNFFAFFPATNXXXXXXXXXXXXXMNTVGFTWQAAPAATEXXXXX 142
++R+ ++PG+THW SP FA FPA++ +N V FTW A+PAATE
Sbjct: 99 DVRDLILPGVTHWQSPRHFAHFPASSSTVGALGEALAAGINVVPFTWAASPAATELEMVV 158
Query: 143 XXXXXXXXXXXXSFMNXXXXXXXXXXXXXXXXXXSEAMLVTLVAARDAALRRSGSNGVAG 202
S + EA+L LVAARD R+ G
Sbjct: 159 VDWLGRALHLPESLL------FAGGGGGTILGTSCEAVLCALVAARD---RKLAEIGARR 209
Query: 203 ITRLTVYAADQTHSTFFKACRLAGFDPANIRSIPTGAETDYGLDPARLLEAMQADADAGL 262
I L VY +DQTH F KA R+AG + R IPT + + L P L AMQAD DAGL
Sbjct: 210 IGDLVVYCSDQTHFAFRKAARIAGIPREHCREIPTCRDDVFALSPTALHAAMQADVDAGL 269
Query: 263 VPTYVCATVGTTSSNXXXXXXXXXXXXXXXXXX-XHVDAAYAGSACICPEFRHHLDGVER 321
VP ++CATVGTT + HVDAAYAGSA +CPEFR + G E
Sbjct: 270 VPLFLCATVGTTQTTAVDPVRELCAVAARHGGVWVHVDAAYAGSALVCPEFRDVIAGAEA 329
Query: 322 VDSISMSPHKWLMTCLDCTCLYVRDTHRLTGSLETNPEY-LKNHASDSGEVTDLKDMQVG 380
VDS+SM+ HKWL+ DC ++V L +L T EY L++ A++ +V D KD
Sbjct: 330 VDSLSMNAHKWLLANNDCCAVWVAAPSALVAALGTEQEYILRDAAAEGHDVVDYKDWGTT 389
Query: 381 VGRRFRGLKLWMVMRTYGAGKLQEHIRSDVAMAKTFEDLVRGDDRFEVVVPRNFALVCFR 440
+ RRFR LK+W+V+R YG L+ H+RS VAMA FE +VRGD RFEVV PR FALVCFR
Sbjct: 390 LTRRFRALKVWLVLRCYGVEGLRSHVRSHVAMAAAFEAMVRGDARFEVVAPRRFALVCFR 449
Query: 441 IRP---RKSGXXXXXXXXXXXXXNRELMERLNKTGKA-YVAHTVVGGRFVLRFAVGSSLQ 496
+R R NR L+E +N Y++ +VGG ++LR A+GS+L
Sbjct: 450 LRSPPERLGVGVGVGGEKAANELNRRLLEEVNAASSGPYMSSAMVGGVYMLRCAIGSTLT 509
Query: 497 EERHVRSAWELIKKTTTEIVADAG 520
EERHVR AW+++++ T I+ G
Sbjct: 510 EERHVREAWKVVQERATSILRKRG 533
>Os10g0380800 Similar to Tyrosine decarboxylase 1 (EC 4.1.1.25) (ELI5) (Fragment)
Length = 526
Score = 345 bits (886), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 209/507 (41%), Positives = 268/507 (52%), Gaps = 30/507 (5%)
Query: 23 RPLDADDVRSYLHKAVDFVYDYYKSVESLPVLPGVEPGYLLRLL--QXXXXXXXXXFDIA 80
R LDAD+ R VD + DYY + PV P V PG+L L + F A
Sbjct: 32 RLLDADEFRRQGRLVVDLIADYYAGMGEYPVHPTVSPGFLRHRLPAEPPSRREPDAFAAA 91
Query: 81 MKELREAVVPGMTHWASPNFFAFFPATNXXXXXXXXXXXXXMNTVGFTWQAAPAATEXXX 140
M+++R+ ++PG+THW SP FA FPA++ +N V FTW A+PAATE
Sbjct: 92 MQDVRDVILPGLTHWQSPRHFAHFPASSSTAGALGEALAAGINVVPFTWAASPAATELEM 151
Query: 141 XXXXXXXXXXXXXXSFMNXXXXXXXXXXXXXXXXXXSEAMLVTLVAARDAALRRSGSNGV 200
+ EA+L LVAARD R+ + G
Sbjct: 152 VVVDWLGKALHLPERLL------FAGGGGGSILGTTCEAILCALVAARD---RKLAAIGE 202
Query: 201 AGITRLTVYAADQTHSTFFKACRLAGFDPANIRSIPTGAETDYGLDPARLLEAMQADADA 260
I L VY +DQTH F KA R+AG + R IPT + + L PA L AM+ DADA
Sbjct: 203 GRIGDLVVYCSDQTHFAFCKAARIAGIRREHCREIPTYRDDAFALSPAALRAAMRRDADA 262
Query: 261 GLVPTYVCATVGTTSSNXXXXXXXXXXXXXXXXXXXHVDAAYAGSACICPEFRHHL-DGV 319
GLVP +VCATVGTT + HVDAAYAGSA +CPE R + GV
Sbjct: 263 GLVPLFVCATVGTTQTTAVDPVGELCAAAAPHGAWVHVDAAYAGSAMVCPELRGAVAGGV 322
Query: 320 ERVDSISMSPHKWLMTCLDCTCLYVRDTHRLTGSLETNPEYL------KNHASDSGE-VT 372
E VDS SM+ HKWL+ DC ++VR L +L T+ EY+ + A+D GE V
Sbjct: 323 EAVDSFSMNAHKWLLANNDCCVMWVRTPSALVAALGTDQEYILKDAAAETAAADGGEGVV 382
Query: 373 DLKDMQVGVGRRFRGLKLWMVMRTYGAGKLQEHIRSDVAMAKTFEDLVRGDDRFEVVVPR 432
D KD + + RRFR LKLW+V+R YG L+EHIRS V MA FE +VR D RFEVV PR
Sbjct: 383 DYKDWGITLTRRFRALKLWLVLRCYGVEGLREHIRSHVGMAAAFEGMVRADARFEVVTPR 442
Query: 433 NFALVCFRIR-PRKSGXXXXXXXXXXXXXNRELMERLNKTGKA-YVAHTVVGGRFVLRFA 490
FALVCFR+R P K NR L+E +N Y++ VGG ++LR A
Sbjct: 443 RFALVCFRLRSPNKK---------TANELNRRLLEEVNAASSGPYMSSANVGGVYMLRCA 493
Query: 491 VGSSLQEERHVRSAWELIKKTTTEIVA 517
VGS+L EERHVR AW++++ T I++
Sbjct: 494 VGSTLTEERHVREAWKVVQDRATSILS 520
>Os05g0510600 Similar to Tyrosine/dopa decarboxylase (EC 4.1.1.28)
Length = 565
Score = 323 bits (828), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 196/506 (38%), Positives = 255/506 (50%), Gaps = 33/506 (6%)
Query: 23 RPLDADDVRSYLHKAVDFVYDYYKSVESLPVLPGVEPGYLLRLLQXXXXXXXX--XFDIA 80
RPLDA + R + VDF+ DYY + PV P V PG+L L
Sbjct: 23 RPLDAGEFRRQGRQVVDFIADYYAGINDYPVRPAVAPGFLAGKLPATAPSTPEPDALTAG 82
Query: 81 MKELREAVVPGMTHWASPNFFAFFPATNXXXXXXXXXXXXXMNTVGFTWQAAPAATEXXX 140
++++RE ++PG+THW SP FA F AT +N FTW+A+PAATE
Sbjct: 83 LRDVRELMLPGLTHWQSPRHFAHFSATASNVGALGEALAAGLNVNPFTWEASPAATELEV 142
Query: 141 XXXXXXXXXXXXXXSFMNXXXXXXXXXXXXXXXXXXSEAMLVTLVAARDAALRRSGSNGV 200
+ EAML T+VAARD L G
Sbjct: 143 VVTDWLGKALHLPERLL------FAGGGGGTLLGTSCEAMLCTIVAARDEKLAEIGEER- 195
Query: 201 AGITRLTVYAADQTHSTFFKACRLAGFDPANIRSIPTGAETDYGLDPARLLEAMQADADA 260
I L VY +DQTH +F KA R+AG N R IPT E+ + L L A+ AD A
Sbjct: 196 --IGDLVVYCSDQTHFSFQKAARIAGIRRGNCREIPTCRESGFVLTATALQAAVAADEAA 253
Query: 261 GLVPTYVCATVGTTSSNXXXXXXXXXXXXXXXXXXXHVDAAYAGSACICPEFRHHLDGVE 320
G VP ++CATVGTT + HVDAAYAG+AC+CPEFRH + G E
Sbjct: 254 GRVPLFLCATVGTTPTAAVDPLRELCAAVEGRGVWVHVDAAYAGAACVCPEFRHAIAGAE 313
Query: 321 RVDSISMSPHKWLMTCLDCTCLYVRDTHRLTGSLETNPEYL---------------KNHA 365
VDS S +PHKWL+ +DC L+V L +L T+ + + +HA
Sbjct: 314 AVDSFSTNPHKWLLANMDCCALWVARPAALVAALGTDDDVILKDAAAAARPARGDHHHHA 373
Query: 366 SDSGEVTDLKDMQVGVGRRFRGLKLWMVMRTYGAGKLQEHIRSDVAMAKTFEDLVRGDDR 425
+ D KD QV + RRFR LKLW+V+R +G L+ +RS V MA + +VR D R
Sbjct: 374 A-----VDYKDWQVALSRRFRALKLWLVLRCHGVDGLRAVVRSHVRMAAALKRMVRADAR 428
Query: 426 FEVVVPRNFALVCFRIRPRKSGXXXXX--XXXXXXXXNRELMERLNKTGKAYVAHTVVGG 483
FEV VPR FALVCFR+R + NR L+E +N TG+AY++ VVGG
Sbjct: 429 FEVPVPRQFALVCFRLRGGGAAAQLVGGDELTASNELNRRLLEAVNATGRAYMSSAVVGG 488
Query: 484 RFVLRFAVGSSLQEERHVRSAWELIK 509
+VLR AVG+SL EE HVR AW +++
Sbjct: 489 MYVLRCAVGNSLTEEHHVREAWSVVQ 514
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,068,145
Number of extensions: 500370
Number of successful extensions: 866
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 835
Number of HSP's successfully gapped: 10
Length of query: 523
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 418
Effective length of database: 11,553,331
Effective search space: 4829292358
Effective search space used: 4829292358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)