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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0400500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tyrosine decarboxylase 1 (EC 4.1.1.25) (ELI5) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.88 (0.0817) R2 : 0.389
β1 : 0.47 (0.284) R2dD : 0.00727 R2D : -0.05
β2 : -- (--) R2dC : -- R2C : --
β3 : 21.2 (3.02) R2dE : 3.36 R2E : -1.62
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 69.9 (13.4) R2dD*E : 1.86 R2D*E : -2.95
γ1 : 0.989 (0.121) R2dN8 : 0.122 R2N8 : 0.0445
σ : 1.05
deviance : 506.12
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_____
C
peak time of C : --
E
wheather : wind
threshold : 9.3
memory length : 695
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15
open length of G : 1.23

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
505.27 1.06 3.88 0.471 0.0884 21.2 -0.434 70 0.99 17 9.3 694 15 1.23
785.5 1.31 3.63 -0.736 0.172 15.4 3.13 -- 0.96 1.97 9.6 173 13.7 4.33
505.71 1.05 3.88 0.471 0.086 21.2 -- 69.9 0.99 15.9 9.3 695 15 1.23
591.43 1.13 3.7 -0.906 0.221 7 -- -- 0.908 2.11 9.601 356 11.5 10.1
506.12 1.05 3.88 0.47 -- 21.2 -- 69.9 0.989 -- 9.3 695 15 1.23
719.78 1.26 3.61 -1.02 0.231 -- -1.03 -- 0.875 19.3 -- -- -- --
722.63 1.26 3.61 -0.994 0.229 -- -- -- 0.873 19.5 -- -- -- --
530.25 1.07 3.58 -0.641 -- 6.87 -- -- 1.03 -- 9.6 664 11.4 10.9
540.26 1.08 3.59 -- 0.0803 7.23 -- -- 0.97 14.4 9.6 653 11.7 11.1
725.42 1.26 3.61 -0.997 -- -- -- -- 0.869 -- -- -- -- --
748.66 1.28 3.59 -- 0.238 -- -- -- 0.983 19.2 -- -- -- --
538.09 1.08 3.52 -- -- 7.13 -- -- 1.14 -- 9.607 653 11.4 19.8
751.66 1.28 3.58 -- -- -- -- -- 0.98 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 510.26 wind 9 720 > th dose dependent rect. 15 1
3 527.83 wind 9 720 > th dose dependent rect. 19 22
7 528.94 wind 9 720 > th dose dependent rect. 12 5
19 534.38 wind 9 720 > th dose dependent rect. 1 16
30 534.91 wind 9 720 > th dose independent rect. 14 2
31 535.26 wind 9 720 > th dose independent rect. 19 22
32 535.68 wind 9 270 < th dose independent sin 11 NA
36 536.47 wind 9 270 > th dose independent sin 11 NA
39 538.22 wind 9 720 > th dose independent rect. 12 4
42 538.86 wind 9 720 > th dose independent rect. 11 6
44 538.99 wind 9 270 > th dose dependent sin 10 NA
45 539.18 wind 9 720 > th dose dependent rect. 11 15
53 539.23 wind 9 720 > th dose dependent rect. 11 12
82 542.94 wind 9 720 > th dose independent rect. 1 16
87 543.23 wind 9 720 > th dose dependent sin 22 NA
117 544.25 wind 9 720 > th dose dependent no NA NA
133 544.25 wind 9 720 > th dose dependent rect. 1 22
187 545.15 wind 9 720 > th dose dependent rect. 14 23
191 545.42 wind 9 720 > th dose independent rect. 14 23
203 545.88 wind 9 720 > th dose independent rect. 11 15
212 545.92 wind 9 720 > th dose independent rect. 11 12
229 546.24 wind 9 720 < th dose independent no NA NA
243 546.80 wind 9 720 > th dose independent no NA NA
259 546.80 wind 9 720 > th dose independent rect. 1 22
309 547.40 wind 9 720 > th dose independent sin 22 NA
312 547.54 wind 9 720 < th dose independent sin 22 NA
575 565.04 wind 9 270 > th dose independent rect. 17 9
593 565.73 wind 9 720 > th dose independent sin 8 NA
612 567.67 wind 9 720 > th dose dependent sin 8 NA
625 569.05 wind 9 720 < th dose independent sin 8 NA
680 571.35 wind 9 270 > th dose independent rect. 17 6
746 572.86 wind 9 270 > th dose dependent rect. 17 9
769 573.51 wind 9 30 > th dose independent sin 13 NA
841 576.04 wind 9 720 < th dose independent rect. 9 16
882 578.06 wind 9 270 > th dose dependent rect. 17 6
885 578.12 wind 9 720 < th dose independent rect. 13 16
920 579.46 wind 9 1440 < th dose independent rect. 11 1
998 581.66 wind 9 270 > th dose independent rect. 19 3