BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0400500 Os10g0400500|Os10g0400500
         (492 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20340.1  | chr2:8779804-8782490 FORWARD LENGTH=491            447   e-126
AT4G28680.2  | chr4:14155248-14158546 FORWARD LENGTH=548          419   e-117

>AT2G20340.1 | chr2:8779804-8782490 FORWARD LENGTH=491
          Length = 490

 Score =  447 bits (1149), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/472 (45%), Positives = 292/472 (61%), Gaps = 17/472 (3%)

Query: 24  VVDFLAGYYRDVDKYPVRAADXXXXXXXXXXXXXXXXXXXXXXRILADVRRDVLPGLTHW 83
           +VDF+A YY+ ++ +PV  +                       ++L DVR  +LPG+THW
Sbjct: 24  MVDFIADYYKTIEDFPV-LSQVQPGYLHKLLPDSAPDHPETLDQVLDDVRAKILPGVTHW 82

Query: 84  QSPSFFAYFPMNASAAGFAGEMLSVGLNVVPFMWVASPAAVELEAVVVDWMARLVGLPDR 143
           QSPSFFAY+P N+S AGF GEMLS GL +V F WV SPAA ELE +V+DW+A+L+ LP++
Sbjct: 83  QSPSFFAYYPSNSSVAGFLGEMLSAGLGIVGFSWVTSPAATELEMIVLDWVAKLLNLPEQ 142

Query: 144 FLFXXXXXXXXXXXXXVLQGSTCEAVVCTLAAARDRALGRIGHEGIVKLVVYASDQTHAT 203
           F+              V+QGS  EAV+  L AARD+ L  +G   + KLVVY+SDQTH+ 
Sbjct: 143 FM-------SKGNGGGVIQGSASEAVLVVLIAARDKVLRSVGKNALEKLVVYSSDQTHSA 195

Query: 204 FQKGARLVGITPANFRVVPXXXXXXXXXXXXXVRAAVEGDVARGLVPLYLCATVGTTGIG 263
            QK  ++ GI P N RV+              ++ AV  D+  GL+P +LCA VGTT   
Sbjct: 196 LQKACQIAGIHPENCRVLTTDSSTNYALRPESLQEAVSRDLEAGLIPFFLCANVGTTSST 255

Query: 264 AVDPVRELGEVARRHGMWLHVDAAYAGSAAICPEYQGYLDGAELADSVSMNPHKWFLTNM 323
           AVDP+  LG++A  +G+W HVDAAYAGSA ICPEY+ Y+DG E ADS +MN HKWFLTN 
Sbjct: 256 AVDPLAALGKIANSNGIWFHVDAAYAGSACICPEYRQYIDGVETADSFNMNAHKWFLTNF 315

Query: 324 DCCCLWVXXXXXXXXXXXXXXEYLKNXXXXXXXXXXXXXXIDYKDWQISLSRRFRAMKLW 383
           DC  LWV              E+LKN              +DYKDWQI L RRFR++KLW
Sbjct: 316 DCSLLWVKDQDSLTLALSTNPEFLKN------KASQANLVVDYKDWQIPLGRRFRSLKLW 369

Query: 384 FVLRRYGAAGMRAHIRRHVAMAEWFERAVSADERFEVVAKRRFSLVCFRL---RXXXXXX 440
            VLR YG+  ++++IR H+ +A+ FE+ VS D  FE+V  R F+LVCFRL   +      
Sbjct: 370 MVLRLYGSETLKSYIRNHIKLAKEFEQLVSQDPNFEIVTPRIFALVCFRLVPVKDEEKKC 429

Query: 441 DAMNRELLAAVNASGRAFMTHFVVEGKFVIRLAVGGAMTEMRHVGDAWELVR 492
           +  NRELL AVN+SG+ FM+H  + GK V+R A+G  +TE +HV +AW++++
Sbjct: 430 NNRNRELLDAVNSSGKLFMSHTALSGKIVLRCAIGAPLTEEKHVKEAWKIIQ 481



>AT4G28680.2 | chr4:14155248-14158546 FORWARD LENGTH=548
          Length = 547

 Score =  419 bits (1077), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/475 (43%), Positives = 286/475 (60%), Gaps = 17/475 (3%)

Query: 24  VVDFLAGYYRDVDKYPVR---AADXXXXXXXXXXXXXXXXXXXXXXRILADVRRDVLPGL 80
           +VDF+A YY+++   P      +                        +L DV + ++PG+
Sbjct: 72  MVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGI 131

Query: 81  THWQSPSFFAYFPMNASAAGFAGEMLSVGLNVVPFMWVASPAAVELEAVVVDWMARLVGL 140
           THWQSPS+FAY+  + S AGF GEML+ GL+VV F W+ SPAA ELE +V+DW+A+L+ L
Sbjct: 132 THWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQL 191

Query: 141 PDRFLFXXXXXXXXXXXXXVLQGSTCEAVVCTLAAARDRALGRIGHEGIVKLVVYASDQT 200
           PD FL              V+QG+ CEAV+  + AARDR L ++G   + +LVVY SDQT
Sbjct: 192 PDHFL-------STGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQT 244

Query: 201 HATFQKGARLVGITPANFRVVPXXXXXXXXXXXXXVRAAVEGDVARGLVPLYLCATVGTT 260
           H++F+K   + GI   N R++              +  A+  D+A+G +P ++CATVGTT
Sbjct: 245 HSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTT 304

Query: 261 GIGAVDPVRELGEVARRHGMWLHVDAAYAGSAAICPEYQGYLDGAELADSVSMNPHKWFL 320
              AVDP+  LG +A+++G+WLHVDAAYAG+A ICPEY+ ++DG E ADS +MN HKW  
Sbjct: 305 SSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLF 364

Query: 321 TNMDCCCLWVXXXXXXXXXXXXXXEYLKNXXXXXXXXXXXXXXIDYKDWQISLSRRFRAM 380
            N  C  LWV              EYL+               ++YKDWQISLSRRFR++
Sbjct: 365 ANQTCSPLWVKDRYSLIDALKTNPEYLE----FKVKVSKKDTVVNYKDWQISLSRRFRSL 420

Query: 381 KLWFVLRRYGAAGMRAHIRRHVAMAEWFERAVSADERFEVVAKRRFSLVCFRLRXXXXXX 440
           KLW VLR YG+  +R  IR HV +A+ FE  V+ D  FEVV  R FSLVCFRL       
Sbjct: 421 KLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDE 480

Query: 441 DAM---NRELLAAVNASGRAFMTHFVVEGKFVIRLAVGGAMTEMRHVGDAWELVR 492
           D     NRELLAAVN++G+ F++H  + GKFV+R AVG  +TE +HV +AW++++
Sbjct: 481 DQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQ 535



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,801,950
Number of extensions: 243619
Number of successful extensions: 588
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 580
Number of HSP's successfully gapped: 2
Length of query: 492
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 389
Effective length of database: 8,282,721
Effective search space: 3221978469
Effective search space used: 3221978469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 114 (48.5 bits)