BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0376200 Os10g0376200|AK121005
(644 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0376200 Leucine-rich repeat, typical subtype containin... 889 0.0
Os07g0106100 Leucine-rich repeat, SDS22 containing protein 218 1e-56
Os05g0501600 Leucine-rich repeat, typical subtype containin... 213 3e-55
Os03g0190300 Conserved hypothetical protein 192 8e-49
Os01g0966400 Leucine-rich repeat, SDS22 containing protein 81 2e-15
>Os10g0376200 Leucine-rich repeat, typical subtype containing protein
Length = 644
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/587 (78%), Positives = 460/587 (78%)
Query: 1 MTRMRCIPGLLXXXXXXXXXXXXXXXSGDCPKVKPVEFIDSPAAECGDRKVAPCXXXXXX 60
MTRMRCIPGLL SGDCPKVKPVEFIDSPAAECGDRKVAPC
Sbjct: 1 MTRMRCIPGLLAGRRKKRVVADAKKASGDCPKVKPVEFIDSPAAECGDRKVAPCDVKVVV 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXMALAKRGSMSSDFEFEFHAHEKPDGHGVPAGASPDAV 120
MALAKRGSMSSDFEFEFHAHEKPDGHGVPAGASPDAV
Sbjct: 61 DDTVVTALAATKGGGGGDDHGGDMALAKRGSMSSDFEFEFHAHEKPDGHGVPAGASPDAV 120
Query: 121 IASGKEVVVADASPKLKRSCSNIETKRPGTHDXXXXXXXXRSRSYXXXXXXXXXXXXXIS 180
IASGKEVVVADASPKLKRSCSNIETKRPGTHD RSRSY IS
Sbjct: 121 IASGKEVVVADASPKLKRSCSNIETKRPGTHDAAAEAAPARSRSYGDLGNLPGGGGGGIS 180
Query: 181 LETTPRGAAPQAEASPASVRTSRTADRVMLKKRSSSQVLPSRSRKLWWRLFLWSHRNLHR 240
LETTPRGAAPQAEASPASVRTSRTADRVMLKKRSSSQVLPSRSRKLWWRLFLWSHRNLHR
Sbjct: 181 LETTPRGAAPQAEASPASVRTSRTADRVMLKKRSSSQVLPSRSRKLWWRLFLWSHRNLHR 240
Query: 241 PSXXXXXXXXXXXXXXXXXXXXXYTSDTLEEGPATAAADRKNKKVMVDDSPPIPNQWVAF 300
PS YTSDTLEEGPATAAADRKNKKVMVDDSPPIPNQWVAF
Sbjct: 241 PSPAARPAAAACTPAGHHGGGGGYTSDTLEEGPATAAADRKNKKVMVDDSPPIPNQWVAF 300
Query: 301 SADNSLHDRISAWVNSIDNDTFRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVARA 360
SADNSLHDRISAWVNSIDNDTFRI CVARA
Sbjct: 301 SADNSLHDRISAWVNSIDNDTFRIAEEDDDDHHHHHHYHGDADDDDGEHAMEHGDCVARA 360
Query: 361 PRALEIGEXXXXXXXXXXRSTAADEVAQANTIIQSLNAFSSVAHISGMGLKVVPMIAPFS 420
PRALEIGE RSTAADEVAQANTIIQSLNAFSSVAHISGMGLKVVPMIAPFS
Sbjct: 361 PRALEIGESSGKGHGKSKRSTAADEVAQANTIIQSLNAFSSVAHISGMGLKVVPMIAPFS 420
Query: 421 SLRAINLSGNFIVHISPGSLPKGLHSLDLSRNKIANIEGLRELTKLRVLNLSYNRISRIG 480
SLRAINLSGNFIVHISPGSLPKGLHSLDLSRNKIANIEGLRELTKLRVLNLSYNRISRIG
Sbjct: 421 SLRAINLSGNFIVHISPGSLPKGLHSLDLSRNKIANIEGLRELTKLRVLNLSYNRISRIG 480
Query: 481 HGLSGCTALRELYLAGNKISDVEGLHRLLKLAVLDLGFNKVTTARALGQLVANYHSLRAL 540
HGLSGCTALRELYLAGNKISDVEGLHRLLKLAVLDLGFNKVTTARALGQLVANYHSLRAL
Sbjct: 481 HGLSGCTALRELYLAGNKISDVEGLHRLLKLAVLDLGFNKVTTARALGQLVANYHSLRAL 540
Query: 541 NLVGNPVQANVGDDALRRAVTGLLPHLAYLNKQPVKPRGAAPADGAV 587
NLVGNPVQANVGDDALRRAVTGLLPHLAYLNKQPVKPRGAAPADGAV
Sbjct: 541 NLVGNPVQANVGDDALRRAVTGLLPHLAYLNKQPVKPRGAAPADGAV 587
>Os07g0106100 Leucine-rich repeat, SDS22 containing protein
Length = 761
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/192 (58%), Positives = 147/192 (76%)
Query: 389 ANTIIQSLNAFSSVAHISGMGLKVVPMIAPFSSLRAINLSGNFIVHISPGSLPKGLHSLD 448
A T I L SS A + +GL +P ++ F LR +NLSGN IV I+ G+LP+GLH L
Sbjct: 482 AYTYISKLTPTSSSAQLGNLGLVAIPRLSAFLGLRLLNLSGNSIVRITAGALPRGLHMLS 541
Query: 449 LSRNKIANIEGLRELTKLRVLNLSYNRISRIGHGLSGCTALRELYLAGNKISDVEGLHRL 508
LS+N I+ IEGLRELT+LR+L++SYNRISRIGHGL+ C++L+ELYL GNKIS+V+GLHRL
Sbjct: 542 LSKNNISTIEGLRELTRLRLLDISYNRISRIGHGLASCSSLKELYLGGNKISEVDGLHRL 601
Query: 509 LKLAVLDLGFNKVTTARALGQLVANYHSLRALNLVGNPVQANVGDDALRRAVTGLLPHLA 568
LKL VLDL NK++T++ LGQL ANY SL A+NL GNP Q NVGD+ L++ + GLLP+L
Sbjct: 602 LKLKVLDLRHNKISTSKGLGQLAANYSSLEAVNLDGNPAQKNVGDEHLKKYLVGLLPNLG 661
Query: 569 YLNKQPVKPRGA 580
+ NK P++ G+
Sbjct: 662 FYNKHPIRASGS 673
>Os05g0501600 Leucine-rich repeat, typical subtype containing protein
Length = 706
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/198 (54%), Positives = 143/198 (72%), Gaps = 2/198 (1%)
Query: 389 ANTIIQSLNAFSSVAHISGMGLKVVPMIAPFSSLRAINLSGNFIVHISPGSLPKGLHSLD 448
A I L SS+A +S +GL +P+++ FS LR +NL+GN I+ I+ G+LPKGL L+
Sbjct: 403 AYNYIAMLKPSSSIAQLSNLGLVAIPILSAFSDLRLLNLAGNSIIRITSGALPKGLRMLN 462
Query: 449 LSRNKIANIEGLRELTKLRVLNLSYNRISRIGHGLSGCTALRELYLAGNKISDVEGLHRL 508
LSRN I+ IEGL+ELT LRVL+LSYNRI++IGHGL+ C L+ELY+ GNKIS+VEGLHR
Sbjct: 463 LSRNNISTIEGLKELTLLRVLDLSYNRITKIGHGLASCPFLKELYIGGNKISEVEGLHR- 521
Query: 509 LKLAVLDLGFNKVTTARALGQLVANYHSLRALNLVGNPVQANVGDDALRRAVTGLLPHLA 568
LKL VLDL N +++++ L QL AN +L+++ L GNP Q NVGD+ L+R V LLPHL
Sbjct: 522 LKLKVLDLHGNSLSSSKCLDQL-ANCGTLQSITLEGNPAQRNVGDEQLKRHVLRLLPHLV 580
Query: 569 YLNKQPVKPRGAAPADGA 586
Y NKQ V+ R + G
Sbjct: 581 YYNKQAVRSRRCSKPQGG 598
>Os03g0190300 Conserved hypothetical protein
Length = 387
Score = 192 bits (487), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 168/321 (52%), Gaps = 38/321 (11%)
Query: 124 GKEVVVADASPKLKRSCSNIETKRPGTHDXXXXXXXXRSRSYXXXXXXXXXXXXXISLET 183
G ++V + +L+RSCSNIET R G+ +S SY S
Sbjct: 88 GVGLMVPAMASRLERSCSNIETARRGSK---AFELPAKSLSYGDLMALPAGG----SATA 140
Query: 184 TPRGAAPQAEASPASVRTSRTADRVMLKKRSSSQVLPSRSRKLWWRLFLWSHRNLHRPSX 243
TP GA + A ASV+T+ +AD VMLKK SSSQVLPSRSRKLWWRL L SHRNLHRP+
Sbjct: 141 TPVGAPDDSPA--ASVKTTCSADHVMLKKCSSSQVLPSRSRKLWWRLLLRSHRNLHRPA- 197
Query: 244 XXXXXXXXXXXXXXXXXXXXYTSDTLEEGPATAAADRKNKKVMVDDSPPIPNQWVAFSAD 303
Y SDTL+ G AT AD KNK + V PIPNQW+AFS++
Sbjct: 198 ----ATVPAAVPSAEQRHDGYASDTLDAGAAT--ADVKNKGIAVGHE-PIPNQWMAFSSE 250
Query: 304 NSLHDRISAWVNSIDNDTFRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVARAPRA 363
+ DR+SAWVNS+ ++ F+ AR P
Sbjct: 251 ATSLDRVSAWVNSLVDNPFK------------------ANEECIVEHDDDDDDTAR-PHC 291
Query: 364 LEIGEXXXXXXX--XXXRSTAADEVAQANTIIQSLNAFSSVAHISGMGLKVVPMIAPFSS 421
EIGE R A E +AN+IIQ+L SSVAHISGMGL V+P+I+PFSS
Sbjct: 292 TEIGEPSSFGGKFPAQARRRMAGEAIKANSIIQTLTTSSSVAHISGMGLTVIPVISPFSS 351
Query: 422 LRAINLSGNFIVHISPGSLPK 442
LRA+NLSGN I +S L K
Sbjct: 352 LRAVNLSGNLIGKLSRSFLVK 372
>Os01g0966400 Leucine-rich repeat, SDS22 containing protein
Length = 463
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 6/169 (3%)
Query: 410 LKVVPMIAPFSSLRAINLSGNFIVHISPGSLPKGLHSLDLSRNKIANI-EGLRELTKLRV 468
LK + + +SL A+ L+ N I I L++L LS+N I I + L + ++
Sbjct: 96 LKTMDEVKSLTSLGALILNDNNISSICKLDQLHQLNTLVLSKNPIFTIGDALMKAKAMKK 155
Query: 469 LNLSYNRISRIGHGLSGCTALRELYLAGNKISDV-EGLHRLLKLAVLDLGFNKVTTARAL 527
L+LS+ +I +IG L+ C L+EL LA NKI+ + L + +K+ LDLG N + R+
Sbjct: 156 LSLSHCQIEKIGSSLTACVELKELRLAHNKITTIPSDLAKNVKILNLDLG-NNLIERRSD 214
Query: 528 GQLVANYHSLRALNLVGNPVQANVGDDALRRAVTGLLPHLAYLNKQPVK 576
++++ H LR LNL GNP+ D L + V L+P+L N +P++
Sbjct: 215 LEVLSELHYLRNLNLQGNPIAEK---DGLAKKVKKLVPNLRIFNSKPME 260
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,967,177
Number of extensions: 546925
Number of successful extensions: 2392
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2375
Number of HSP's successfully gapped: 6
Length of query: 644
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 537
Effective length of database: 11,448,903
Effective search space: 6148060911
Effective search space used: 6148060911
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)