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Os07g0106100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat, SDS22 containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0169) R2 : 0.773
β1 : -0.854 (0.0617) R2dD : 0.0991 R2D : 0.0733
β2 : 1.48 (0.041) R2dC : 0.653 R2C : 0.638
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.345 (0.036) R2dN8 : 0.0615 R2N8 : 0.0169
σ : 0.317
deviance : 45.77
__
_____
C
peak time of C : 9.79
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.12 0.286 10.6 -0.886 1.1 -0.413 -0.0734 -0.889 -0.345 8.89 0.05977 29 -- --
38.9 0.29 10.6 -0.918 1.11 -0.403 0.867 -- -0.359 9.03 0.00981 39 -- --
37.13 0.284 10.6 -0.891 1.11 -0.414 -- -0.849 -0.347 8.9 0.04998 28 -- --
41.46 0.3 10.6 -0.898 1.11 -0.405 -- -- -0.356 8.9 0.04 41 -- --
71.09 0.395 10.6 -0.897 -- -0.96 -- -0.625 -0.4 -- 0.04 23 -- --
42.73 0.306 10.6 -0.887 1.48 -- 0.892 -- -0.346 9.83 -- -- -- --
45.77 0.317 10.6 -0.854 1.48 -- -- -- -0.345 9.79 -- -- -- --
73.64 0.401 10.6 -0.919 -- -0.964 -- -- -0.408 -- 7.6e-06 37 -- --
62.84 0.369 10.6 -- 1.13 -0.357 -- -- -0.274 9.08 0.08086 51 -- --
176.45 0.621 10.6 -0.868 -- -- -- -- -0.344 -- -- -- -- --
64.97 0.377 10.6 -- 1.48 -- -- -- -0.25 9.83 -- -- -- --
95.91 0.458 10.6 -- -- -0.952 -- -- -0.305 -- 7.6e-06 37 -- --
196.34 0.654 10.6 -- -- -- -- -- -0.247 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.09 radiation 1.0 90 > th dose independent rect. 12 18
2 31.21 radiation 1.0 90 < th dose dependent sin 15 NA
4 31.28 radiation 20.0 270 < th dose independent rect. 15 10
5 31.28 temperature 10.0 270 > th dose dependent rect. 18 16
6 31.40 temperature 30.0 270 < th dose dependent rect. 22 8
7 31.52 radiation 40.0 270 < th dose dependent rect. 15 10
8 31.55 radiation 1.0 90 < th dose independent sin 15 NA
9 31.59 temperature 10.0 30 > th dose dependent rect. 12 7
13 31.73 radiation 1.0 90 > th dose independent sin 15 NA
15 31.75 humidity 90.0 90 < th dose independent rect. 12 7
16 31.75 temperature 10.0 270 > th dose dependent rect. 17 8
23 31.89 temperature 10.0 270 > th dose dependent rect. 10 7
25 31.92 temperature 10.0 90 > th dose dependent rect. 19 8
27 31.93 radiation 1.0 270 > th dose independent rect. 10 20
40 32.16 precipitation 0.1 90 < th dose independent rect. 12 7
41 32.16 precipitation 0.1 90 < th dose dependent rect. 12 7
42 32.17 radiation 30.0 270 < th dose dependent sin 17 NA
44 32.19 humidity 50.0 270 > th dose independent rect. 16 9
46 32.20 humidity 50.0 270 > th dose independent rect. 6 15
56 32.33 radiation 1.0 270 > th dose independent rect. 11 6
57 32.33 precipitation 0.1 270 < th dose independent rect. 10 8
58 32.33 precipitation 0.1 270 < th dose dependent rect. 10 8
78 32.37 temperature 20.0 30 > th dose independent rect. 12 7
80 32.38 wind 9.0 270 < th dose independent rect. 21 9
85 32.39 temperature 10.0 270 > th dose independent rect. 21 9
86 32.39 temperature 30.0 270 < th dose independent rect. 21 9
87 32.39 humidity 50.0 270 > th dose independent rect. 21 9
90 32.39 atmosphere 995.0 270 > th dose independent rect. 21 9
91 32.39 radiation 20.0 270 < th dose independent rect. 21 9
94 32.39 temperature 10.0 270 > th dose independent rect. 6 15
96 32.40 wind 9.0 30 < th dose independent rect. 19 17
98 32.41 wind 9.0 30 < th dose independent rect. 12 7
105 32.44 temperature 10.0 30 > th dose independent rect. 12 7
107 32.44 atmosphere 1015.0 30 < th dose independent rect. 12 7
108 32.44 temperature 10.0 30 > th dose independent rect. 19 17
109 32.44 atmosphere 995.0 30 > th dose independent rect. 19 17
117 32.47 humidity 50.0 270 > th dose independent rect. 17 18
123 32.51 atmosphere 1015.0 270 < th dose independent rect. 6 15
136 32.52 radiation 1.0 90 < th dose dependent rect. 7 20
140 32.55 precipitation 0.1 270 < th dose independent rect. 1 15
142 32.55 radiation 1.0 90 < th dose dependent rect. 13 14
143 32.55 precipitation 0.1 270 < th dose dependent rect. 1 15
145 32.55 radiation 1.0 90 < th dose dependent rect. 9 18
156 32.60 wind 9.0 270 < th dose independent rect. 6 15
161 32.62 temperature 15.0 270 > th dose independent rect. 10 8
168 32.63 atmosphere 1015.0 270 < th dose independent rect. 10 8
169 32.63 temperature 10.0 270 > th dose independent rect. 18 16
173 32.64 precipitation 0.1 270 < th dose independent rect. 21 9
174 32.64 precipitation 0.1 270 < th dose dependent rect. 21 9
176 32.65 humidity 90.0 270 < th dose independent rect. 10 8
179 32.66 radiation 40.0 270 < th dose dependent rect. 21 9
183 32.68 wind 9.0 270 < th dose independent rect. 10 8
209 32.74 wind 9.0 270 < th dose independent rect. 16 9
211 32.75 wind 1.0 30 > th dose independent rect. 12 7
213 32.76 temperature 10.0 270 > th dose independent rect. 16 9
215 32.76 temperature 10.0 270 > th dose independent rect. 1 15
216 32.76 atmosphere 1015.0 270 < th dose independent rect. 1 15
219 32.78 wind 9.0 270 < th dose independent rect. 1 15
222 32.79 temperature 10.0 1440 > th dose independent rect. 13 7
226 32.79 temperature 20.0 270 > th dose independent rect. 17 8
227 32.79 temperature 10.0 1440 > th dose independent rect. 20 17
230 32.79 atmosphere 995.0 1440 > th dose independent rect. 20 17
270 32.85 wind 9.0 270 < th dose independent rect. 17 18
271 32.85 radiation 1.0 90 < th dose independent rect. 9 18
278 32.86 radiation 1.0 90 < th dose independent rect. 13 14
279 32.86 radiation 1.0 90 < th dose independent rect. 11 16
281 32.86 temperature 10.0 270 > th dose independent rect. 17 18
282 32.86 radiation 1.0 270 > th dose dependent sin 16 NA
287 32.87 precipitation 0.1 270 < th dose independent rect. 18 16
288 32.87 precipitation 0.1 270 < th dose dependent rect. 18 16
308 32.91 radiation 20.0 270 < th dose dependent rect. 6 19
315 32.94 precipitation 0.1 30 < th dose independent rect. 19 17
317 32.94 precipitation 0.1 30 < th dose dependent rect. 19 17
323 32.95 radiation 1.0 270 > th dose dependent rect. 12 18
349 32.99 radiation 1.0 270 > th dose dependent rect. 12 7
385 33.03 precipitation 0.1 270 < th dose independent rect. 17 18
388 33.03 precipitation 0.1 270 < th dose dependent rect. 17 18
401 33.04 precipitation 0.1 270 < th dose independent rect. 6 15
407 33.04 precipitation 0.1 270 < th dose dependent rect. 6 15
440 33.16 atmosphere 995.0 270 > th dose independent rect. 17 18
468 33.20 humidity 90.0 90 < th dose dependent rect. 12 7
525 33.35 precipitation 0.1 270 < th dose independent rect. 16 9
527 33.35 precipitation 0.1 270 < th dose dependent rect. 16 9
553 33.42 radiation 40.0 270 < th dose independent rect. 18 16
563 33.44 humidity 50.0 30 > th dose independent rect. 19 17
565 33.44 wind 9.0 270 < th dose independent rect. 11 19
566 33.44 precipitation 0.1 270 < th dose independent rect. 11 19
570 33.44 precipitation 0.1 270 < th dose dependent rect. 11 19
576 33.46 wind 9.0 270 < th dose independent rect. 6 5
577 33.46 temperature 10.0 270 > th dose independent rect. 6 5
579 33.46 atmosphere 995.0 270 > th dose independent rect. 6 5
580 33.46 atmosphere 1015.0 270 < th dose independent rect. 6 5
581 33.46 wind 1.0 270 > th dose independent rect. 10 8
583 33.46 temperature 10.0 270 > th dose independent rect. 11 19
587 33.47 precipitation 0.1 270 < th dose independent rect. 6 5
589 33.47 wind 1.0 270 > th dose independent rect. 16 9
590 33.47 precipitation 0.1 270 < th dose dependent rect. 6 5
594 33.48 humidity 50.0 270 > th dose independent rect. 6 5
616 33.50 atmosphere 995.0 270 > th dose independent rect. 1 15
626 33.52 radiation 40.0 270 < th dose dependent rect. 6 17
628 33.53 temperature 30.0 90 < th dose independent rect. 17 10
697 33.64 atmosphere 995.0 270 > th dose independent rect. 11 6
703 33.65 atmosphere 995.0 30 > th dose independent rect. 12 7
730 33.67 radiation 20.0 270 < th dose independent rect. 6 19
735 33.68 wind 1.0 90 > th dose independent rect. 19 17
741 33.69 atmosphere 1015.0 30 < th dose independent rect. 19 17
746 33.70 temperature 30.0 270 < th dose independent rect. 17 17
772 33.74 temperature 20.0 90 > th dose independent rect. 19 8
793 33.78 radiation 40.0 270 < th dose independent rect. 17 18
797 33.78 humidity 50.0 270 > th dose dependent rect. 21 9
798 33.79 radiation 1.0 270 > th dose independent rect. 6 5
806 33.80 atmosphere 995.0 270 > th dose independent rect. 16 9
807 33.80 atmosphere 995.0 270 > th dose independent rect. 6 15
821 33.82 wind 9.0 270 < th dose independent rect. 12 17
846 33.87 radiation 1.0 270 < th dose independent sin 7 NA
849 33.87 wind 9.0 270 < th dose independent rect. 5 7
850 33.87 temperature 10.0 270 > th dose independent rect. 5 7
851 33.87 atmosphere 995.0 270 > th dose independent rect. 5 7
852 33.87 atmosphere 1015.0 270 < th dose independent rect. 5 7
853 33.87 atmosphere 1015.0 270 < th dose independent rect. 22 8
862 33.87 temperature 10.0 270 > th dose independent rect. 12 17
871 33.88 precipitation 0.1 270 < th dose independent rect. 12 17
877 33.88 precipitation 0.1 270 < th dose dependent rect. 12 17
893 33.90 precipitation 0.1 270 < th dose independent rect. 5 7
898 33.90 precipitation 0.1 270 < th dose dependent rect. 5 7
911 33.91 radiation 1.0 270 < th dose dependent sin 7 NA
954 33.96 temperature 30.0 270 < th dose dependent rect. 1 4
958 33.97 temperature 10.0 1440 > th dose independent rect. 8 5
961 33.97 atmosphere 995.0 1440 > th dose independent rect. 8 5
966 33.97 temperature 10.0 1440 > th dose independent rect. 13 19
974 33.98 wind 1.0 30 > th dose independent rect. 7 5