Os05g0501600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, typical subtype containing protein.
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Os05g0501600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, typical subtype containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.24 | 0.418 | 7.2 | 2.36 | 0.671 | -1.13 | -0.157 | 1.14 | 0.26 | 4.65 | 14.77 | 4087 | -- | -- |
| 77.02 | 0.409 | 7.2 | 2.38 | 0.65 | -1.3 | 0.0287 | -- | 0.376 | 4.81 | 12.1 | 10405 | -- | -- |
| 79.12 | 0.414 | 7.2 | 2.39 | 0.641 | -1.16 | -- | 1.28 | 0.276 | 4.73 | 14.61 | 3224 | -- | -- |
| 76.95 | 0.409 | 7.2 | 2.35 | 0.644 | -1.32 | -- | -- | 0.37 | 4.84 | 12.1 | 10349 | -- | -- |
| 97.1 | 0.461 | 7.23 | 2.04 | -- | -1.38 | -- | 1.44 | 0.211 | -- | 13.86 | 9160 | -- | -- |
| 105.48 | 0.481 | 7.29 | 1.57 | 0.616 | -- | -0.0233 | -- | -0.0406 | 5.03 | -- | -- | -- | -- |
| 105.48 | 0.481 | 7.29 | 1.57 | 0.616 | -- | -- | -- | -0.0405 | 5.04 | -- | -- | -- | -- |
| 98.43 | 0.462 | 7.21 | 2.3 | -- | -1.3 | -- | -- | 0.368 | -- | 8.641 | 9178 | -- | -- |
| 166.05 | 0.6 | 7.33 | -- | 0.631 | -0.307 | -- | -- | -0.18 | 4.94 | 28 | 1508 | -- | -- |
| 125.42 | 0.523 | 7.3 | 1.59 | -- | -- | -- | -- | -0.0247 | -- | -- | -- | -- | -- |
| 170.29 | 0.61 | 7.33 | -- | 0.644 | -- | -- | -- | -0.215 | 4.95 | -- | -- | -- | -- |
| 182.81 | 0.632 | 7.32 | -- | -- | -0.78 | -- | -- | -0.113 | -- | 8.641 | 9178 | -- | -- |
| 192.13 | 0.647 | 7.34 | -- | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.59 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 2 | 74.68 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 3 | 74.85 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 8 | 74.92 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 9 | 74.93 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 11 | 74.94 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 30 | 75.13 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 31 | 75.13 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 37 | 75.16 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 42 | 75.20 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 43 | 75.21 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 56 | 75.43 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 75 | 75.78 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 76 | 75.84 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 79 | 75.91 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 80 | 75.91 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 81 | 75.91 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 82 | 75.91 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 83 | 75.95 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 84 | 75.96 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 85 | 75.97 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 97 | 76.08 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 98 | 76.11 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 104 | 76.26 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 119 | 76.52 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 123 | 76.56 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 124 | 76.56 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 136 | 76.58 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 138 | 76.59 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 139 | 76.59 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 10 |
| 180 | 76.68 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 188 | 76.68 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 203 | 76.70 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 205 | 76.71 | radiation | 1.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 227 | 76.74 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 230 | 76.74 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 7 |
| 251 | 76.80 | radiation | 1.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 253 | 76.80 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 255 | 76.81 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 257 | 76.81 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 262 | 76.82 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 304 | 76.90 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 7 | 5 |
| 381 | 77.06 | wind | 3.0 | 43200 | > th | dose dependent | sin | 5 | NA |
| 385 | 77.08 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 393 | 77.11 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 426 | 77.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 2 |
| 431 | 77.17 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 438 | 77.18 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 452 | 77.20 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 462 | 77.21 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 467 | 77.22 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 484 | 77.23 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 485 | 77.23 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 509 | 77.28 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 521 | 77.31 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 523 | 77.31 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 531 | 77.32 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 554 | 77.37 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 588 | 77.43 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 597 | 77.45 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 607 | 77.47 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 610 | 77.47 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 616 | 77.49 | wind | 5.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 621 | 77.49 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 632 | 77.51 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 18 |
| 651 | 77.56 | wind | 5.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 662 | 77.58 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 7 |
| 670 | 77.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 5 |
| 692 | 77.63 | wind | 7.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 708 | 77.66 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 709 | 77.66 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 736 | 77.70 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 745 | 77.71 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 787 | 77.75 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 812 | 77.79 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 822 | 77.82 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 854 | 77.86 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 857 | 77.87 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 863 | 77.88 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 871 | 77.88 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 879 | 77.88 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 883 | 77.88 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 905 | 77.91 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 918 | 77.92 | wind | 5.0 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 994 | 77.99 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 7 | 4 |