BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0501600 Os05g0501600|AK100270
(706 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G03260.1 | chr4:1429092-1431431 FORWARD LENGTH=678 280 3e-75
AT1G78230.1 | chr1:29430226-29432516 FORWARD LENGTH=682 204 9e-53
AT5G22320.1 | chr5:7388175-7390426 REVERSE LENGTH=453 60 4e-09
AT2G34680.1 | chr2:14616947-14628300 REVERSE LENGTH=1709 57 3e-08
AT3G17920.1 | chr3:6137255-6142023 FORWARD LENGTH=1011 55 1e-07
AT1G48540.1 | chr1:17945540-17950405 FORWARD LENGTH=1064 50 4e-06
>AT4G03260.1 | chr4:1429092-1431431 FORWARD LENGTH=678
Length = 677
Score = 280 bits (715), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 231/632 (36%), Positives = 321/632 (50%), Gaps = 93/632 (14%)
Query: 1 MVRFSCFSYSSRHHRSKKLVASSVE-----DRWAYPNLTQKVDGKNCSNSNVEQLRSPPF 55
MVRFSCF+ HR KK V E D L+ + G+N + S E +
Sbjct: 1 MVRFSCFNAHIHRHRPKKSVEGFSERVIKEDGSKSKGLSSIIFGRNIA-SVSENSKPAAV 59
Query: 56 EDCCRSEDFSFCTENESG-------KIKKSQSLGDMLEMEKLYDFDKTNNKGEDCAID-- 106
E +SE+ E G +KKSQS G+ L ++ D T N G D A D
Sbjct: 60 ERVWKSEEIKPSGILEHGIGTHQVLHLKKSQSHGNELYLD---GRDATEN-GTDDASDRI 115
Query: 107 ---GSHDEKTCTGECTRKKKENRT---------SCCGDFTDPHQHECQS--SLGNSEHLI 152
S ++++ E K+ + + + + +Q C S S+G+ H
Sbjct: 116 TSPNSLEQQSGIHEAGSSKRVDESPNLYQQGPRASVSAYQGSNQALCGSIFSVGDLHH-T 174
Query: 153 EKQCDCEDIVSTYCLVNSEEQSFLPEPQPLLSRSQSVNLDVHIPTVIEDSIDSAQ----L 208
+K D S Y S P PL+ RS S +P + + S + +
Sbjct: 175 DKDSRQLDDTSLYGEQMDNSNSQTPHDSPLMVRSNS------LPNIADSSSEKSSPFKYS 228
Query: 209 GLRSRSFGNLSSLDGAPYTEEARVSPSHCKDASEDFVQSNAQSQCHCRDEHINNSSTDEI 268
SRS +L +LD R + + E+ Q Q RD ++NS D
Sbjct: 229 SHHSRSSDDLHALD-------TRQTDKSVHETDEEVKQEEDQD----RDYDMHNSG-DNN 276
Query: 269 SQCCVESGNDCHHSDFTSTAAVTPVRNSNSFDDPPSLSHDAGNTEEIFQQIDKREVATSV 328
+ VE G D + D++S A V PP T+E+
Sbjct: 277 KENLVEDGYDDSY-DYSSLAKDWIV--------PP--------TDEL----------KLS 309
Query: 329 KNCEPEPCYQNCCTSSRKEFNVRRIENWISQI------PDSNDIAPYEQGECSSSAHLMN 382
K E E Q S K+ +RIE+W++ + ++++I Y+ E ++N
Sbjct: 310 KFLEGETTNQQAEFSG-KDSKFKRIEDWVNDLQHVNLSEEADEITGYDD-ELPREPVVLN 367
Query: 383 SKQVDTIRKLNAKSPLGMETAYNYIAMLKPSSSIAQLSNLGLVAIPILSAFSDLRLLNLA 442
+ + + K GME A YI+ L S++ AQL + GLV IP LSAF LR+LNL+
Sbjct: 368 EQATSSAKVDAIKLTPGMEAAKKYISSLSASATTAQLVSHGLVVIPFLSAFVGLRVLNLS 427
Query: 443 GNSIIRITSGALPKGLRMLNLSRNNISTIEGLKELTLLRVLDLSYNRITKIGHGLASCPF 502
GN+I+RIT+GALP+GL LNLS+N+IS IEGL+ELT LRVLDLSYNRI ++GHGLASC
Sbjct: 428 GNAIVRITAGALPRGLHALNLSKNSISVIEGLRELTRLRVLDLSYNRILRLGHGLASCSS 487
Query: 503 LKELYIGGNKISEVEGLHR-LKLKVLDLHGNSLSSSKCLDQL-ANCGTLQSITLEGNPAQ 560
LKELY+ GNKISE+EGLHR LKL VLDL N S++KCL QL AN +LQ+I+LEGNPAQ
Sbjct: 488 LKELYLAGNKISEIEGLHRLLKLTVLDLRFNKFSTTKCLGQLAANYSSLQAISLEGNPAQ 547
Query: 561 RNVGDEQLKRHVLRLLPHLVYYNKQAVRSRRC 592
+NVGDEQL++++L LLP+LVYYN+Q + R
Sbjct: 548 KNVGDEQLRKYLLGLLPNLVYYNRQGTKDARL 579
>AT1G78230.1 | chr1:29430226-29432516 FORWARD LENGTH=682
Length = 681
Score = 204 bits (520), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 114/269 (42%), Positives = 172/269 (63%), Gaps = 18/269 (6%)
Query: 335 PCYQNCCTSSRKEFNVRRIENWI------SQIP---DSNDIAPYEQGECSSSAHLMNSKQ 385
P + S + +++R++ W+ + +P D + +A + + + L N Q
Sbjct: 350 PHHNQWVAFSAESSSMKRVDEWVRGLDVETVVPVNEDKDVLAIFPTSPNTERSPLGNVVQ 409
Query: 386 VDTIRKLNAKSPLGMETAYNYIAMLKPSSSIAQLSNLGLVAIPILSAFSDLRLLNLAGNS 445
+ + + A + I L SSS+A +S++GL AIP +S F+ L+ ++L+ N
Sbjct: 410 SGNVSE-------AIVHANSLIQSLSKSSSVAHISSIGLKAIPSISHFTSLKSIDLSNNF 462
Query: 446 IIRITSGALPKGLRMLNLSRNNISTIEGLKELTLLRVLDLSYNRITKIGHGLASCPFLKE 505
I++IT +LPKGL LNLS+N IS IEGL++LT LRVLDLSYNRI++IG GL++C +KE
Sbjct: 463 IVQITPASLPKGLHALNLSKNKISVIEGLRDLTRLRVLDLSYNRISRIGQGLSNCTLIKE 522
Query: 506 LYIGGNKISEVEGLHR-LKLKVLDLHGNSLSSSKCLDQL-ANCGTLQSITLEGNPAQRNV 563
LY+ GNKIS VEGLHR LKL VLDL N ++++K + QL AN +L ++ + GNP Q NV
Sbjct: 523 LYLAGNKISNVEGLHRLLKLIVLDLSFNKIATTKAIGQLVANYNSLVALNILGNPIQNNV 582
Query: 564 GDEQLKRHVLRLLPHLVYYNKQAVRSRRC 592
G++QL++ V LLP LVY+NKQ ++ +R
Sbjct: 583 GEDQLRKTVSSLLPKLVYHNKQLIKPQRA 611
>AT5G22320.1 | chr5:7388175-7390426 REVERSE LENGTH=453
Length = 452
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 6/169 (3%)
Query: 430 LSAFSDLRLLNLAGNSIIRITSGALPKGLRMLNLSRNNISTI-EGLKELTLLRVLDLSYN 488
+S+ +LR L L N I I L K L L LSRN IS I + L +L L + LS
Sbjct: 103 ISSLVNLRALILNDNEISSICKLDLLKDLNSLVLSRNPISEIGDSLSKLKNLSKISLSDC 162
Query: 489 RITKIGHGLASCPFLKELYIGGNKISEV--EGLHRLKLKVLDLHGNSLSSSKCLDQLANC 546
RI IG L SC LKEL + N+I + E +L LD+ N ++ L+ L
Sbjct: 163 RIKAIGSSLKSCSDLKELRLANNEIKALPAELAVNKRLLNLDVGNNVITQLSGLEVLGTL 222
Query: 547 GTLQSITLEGNPAQRNVGDEQLKRHVLRLLPHLVYYNKQAV-RSRRCSK 594
L+++ + GNP N D+ K+ LLP + +N Q + +S R +K
Sbjct: 223 SCLRNLNIRGNPISDN--DKSAKKVRTLLLPSVNVFNAQPLEKSSRNAK 269
>AT2G34680.1 | chr2:14616947-14628300 REVERSE LENGTH=1709
Length = 1708
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 5/117 (4%)
Query: 430 LSAFSDLRLLNLAGNSIIRITSGAL--PKGLRMLNLSRNNISTIEGLKELTLLRVLDLSY 487
+ A D+RL +L G+ I +TSG L L + L N +ST+EG++ L ++VLDLS+
Sbjct: 265 VKAGDDMRL-DLRGHRIRSLTSGGLHLSPNLEFVYLRDNLLSTLEGIEILNRVKVLDLSF 323
Query: 488 NRITKIG-HGLASCPFLKELYIGGNKISEVEGLHRL-KLKVLDLHGNSLSSSKCLDQ 542
N G L +C L++LY+ GN+I+ + L +L L+ L + N L S Q
Sbjct: 324 NDFKGPGFEPLENCKMLQQLYLAGNQITSLASLPQLPNLEFLSVAQNKLKSLAMASQ 380
>AT3G17920.1 | chr3:6137255-6142023 FORWARD LENGTH=1011
Length = 1010
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 19/150 (12%)
Query: 461 LNLSRNNISTIEGLKELTLLRVLDLSYNRITKIGH-GLASCPFLKELYIGGNKISEVEGL 519
L+LSRN + ++ L+ L+ LDL +N++ KI H SC +K L + N ++ + G+
Sbjct: 196 LDLSRNKFAKVDNLRRCNKLKHLDLGFNQLRKISHLSEVSCHLVK-LVLRNNALTTLRGI 254
Query: 520 HRLK-LKVLDLHGNSLSSSKCLDQLANCGTLQSITLEGNPAQRNVGDEQLKRHVLR--LL 576
LK L+ LD+ N +S L+ L + L + LEGNP + HVL L
Sbjct: 255 ENLKSLEGLDVSFNLISDFSELEFLGSLSFLTDLWLEGNPI---CCARWYRAHVLSYVYL 311
Query: 577 PHLV-----------YYNKQAVRSRRCSKP 595
P+ + ++ +Q V +RR S+P
Sbjct: 312 PNDLKLDGKHIGNREFWKRQVVVTRRKSQP 341
>AT1G48540.1 | chr1:17945540-17950405 FORWARD LENGTH=1064
Length = 1063
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 461 LNLSRNNISTIEGLKELTLLRVLDLSYNRITKIGH-GLASCPFLKELYIGGNKISEVEGL 519
L+LSRN ++ L+ T L+ LDL +N + + + SC +K L + N ++ + G+
Sbjct: 196 LDLSRNKFVKVDNLRRCTKLKHLDLGFNHLRTVSYLSQVSCHLVK-LVLRNNALTTLRGI 254
Query: 520 HRLK-LKVLDLHGNSLSSSKCLDQLANCGTLQSITLEGNPA 559
LK L+ LD+ N +S+ L+ L + L+ + LEGNP
Sbjct: 255 ENLKSLQGLDVSYNIISNFSELEFLWSLSQLKELWLEGNPV 295
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.130 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,712,823
Number of extensions: 627152
Number of successful extensions: 2296
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2321
Number of HSP's successfully gapped: 10
Length of query: 706
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 600
Effective length of database: 8,200,473
Effective search space: 4920283800
Effective search space used: 4920283800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 115 (48.9 bits)