Os01g0966400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, SDS22 containing protein.
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Os01g0966400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, SDS22 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.89 | 0.274 | 8.97 | -0.274 | 0.529 | -0.543 | -1.01 | 0.495 | -0.0281 | 8.05 | 0.14 | 97 | -- | -- |
| 34.79 | 0.275 | 8.97 | -0.276 | 0.528 | -0.508 | -0.72 | -- | -0.0298 | 7.55 | 0.13 | 105 | -- | -- |
| 36.07 | 0.28 | 8.97 | -0.291 | 0.493 | -0.511 | -- | 0.143 | -0.00275 | 7.7 | 0.14 | 101 | -- | -- |
| 36.11 | 0.28 | 8.97 | -0.284 | 0.51 | -0.523 | -- | -- | -0.0143 | 7.91 | 0.1301 | 99 | -- | -- |
| 37.17 | 0.284 | 9 | -0.3 | -- | -0.686 | -- | 0.471 | -0.0653 | -- | 0.43 | 513 | -- | -- |
| 38.4 | 0.291 | 8.99 | -0.363 | 0.662 | -- | -0.417 | -- | -0.0735 | 3.9 | -- | -- | -- | -- |
| 38.89 | 0.292 | 8.99 | -0.358 | 0.658 | -- | -- | -- | -0.0711 | 3.8 | -- | -- | -- | -- |
| 38.05 | 0.287 | 8.99 | -0.306 | -- | -0.676 | -- | -- | -0.0477 | -- | 0.44 | 516 | -- | -- |
| 38.68 | 0.29 | 8.97 | -- | 0.509 | -0.524 | -- | -- | -0.000731 | 7.93 | 0.14 | 99 | -- | -- |
| 62.75 | 0.37 | 8.99 | -0.331 | -- | -- | -- | -- | -0.0535 | -- | -- | -- | -- | -- |
| 42.27 | 0.304 | 8.98 | -- | 0.651 | -- | -- | -- | -0.0312 | 3.8 | -- | -- | -- | -- |
| 40.35 | 0.296 | 8.98 | -- | -- | -0.675 | -- | -- | -0.0131 | -- | 0.1302 | 509 | -- | -- |
| 65.64 | 0.378 | 8.99 | -- | -- | -- | -- | -- | -0.0169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.18 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 4 | 33.36 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 2 |
| 5 | 33.48 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 12 |
| 9 | 33.63 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 15 | 33.80 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 20 | 33.96 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 22 |
| 36 | 34.15 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 38 | 34.17 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 41 | 34.20 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 45 | 34.21 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 46 | 34.21 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 51 | 34.24 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 55 | 34.27 | radiation | 1.0 | 90 | < th | dose dependent | no | NA | NA |
| 57 | 34.28 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 58 | 34.28 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 66 | 34.32 | humidity | 80.0 | 720 | > th | dose independent | rect. | 9 | 13 |
| 67 | 34.32 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 89 | 34.40 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 101 | 34.48 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 102 | 34.49 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 21 |
| 120 | 34.56 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 129 | 34.58 | humidity | 80.0 | 720 | > th | dose independent | rect. | 24 | 22 |
| 130 | 34.58 | radiation | 20.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 131 | 34.58 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 132 | 34.58 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 24 | 16 |
| 139 | 34.61 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 145 | 34.63 | humidity | 80.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 148 | 34.63 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 172 | 34.70 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 173 | 34.71 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 192 | 34.75 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 13 |
| 201 | 34.76 | temperature | 30.0 | 720 | < th | dose independent | rect. | 18 | 10 |
| 214 | 34.78 | radiation | 1.0 | 90 | > th | dose independent | no | NA | NA |
| 215 | 34.78 | radiation | 1.0 | 90 | < th | dose independent | no | NA | NA |
| 218 | 34.78 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 246 | 34.78 | radiation | 1.0 | 720 | < th | dose independent | rect. | 24 | 21 |
| 265 | 34.78 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 266 | 34.78 | radiation | 1.0 | 90 | < th | dose independent | rect. | 12 | 23 |
| 270 | 34.79 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 4 |
| 273 | 34.79 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 305 | 34.83 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 24 | 3 |
| 307 | 34.83 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 20 |
| 313 | 34.84 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 322 | 34.84 | radiation | 1.0 | 720 | > th | dose independent | rect. | 12 | 21 |
| 325 | 34.84 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 330 | 34.85 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 331 | 34.86 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 332 | 34.86 | temperature | 30.0 | 720 | < th | dose independent | rect. | 18 | 2 |
| 335 | 34.86 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 346 | 34.88 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 347 | 34.88 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 360 | 34.90 | humidity | 70.0 | 720 | > th | dose independent | sin | 14 | NA |
| 364 | 34.90 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 12 |
| 367 | 34.90 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 23 |
| 368 | 34.90 | radiation | 1.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 377 | 34.91 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 391 | 34.92 | radiation | 1.0 | 720 | < th | dose independent | rect. | 18 | 9 |
| 396 | 34.92 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 397 | 34.93 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 398 | 34.93 | radiation | 1.0 | 720 | > th | dose independent | rect. | 14 | 1 |
| 405 | 34.93 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 22 |
| 417 | 34.94 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 423 | 34.95 | radiation | 1.0 | 720 | > th | dose independent | rect. | 12 | 5 |
| 425 | 34.95 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 10 |
| 440 | 34.96 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 455 | 34.98 | temperature | 20.0 | 30 | > th | dose independent | rect. | 5 | 14 |
| 462 | 34.99 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 472 | 34.99 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 485 | 35.00 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 498 | 35.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 13 |
| 508 | 35.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 13 |
| 518 | 35.02 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 14 |
| 546 | 35.03 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 550 | 35.03 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 18 | 22 |
| 563 | 35.04 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 587 | 35.06 | radiation | 1.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 598 | 35.07 | wind | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 599 | 35.07 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 636 | 35.08 | radiation | 1.0 | 720 | < th | dose independent | rect. | 24 | 16 |
| 644 | 35.08 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 681 | 35.10 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 9 |
| 709 | 35.12 | humidity | 80.0 | 720 | < th | dose independent | rect. | 8 | 14 |
| 725 | 35.13 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 21 | 20 |
| 727 | 35.13 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 732 | 35.13 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 733 | 35.13 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 21 | 20 |
| 735 | 35.13 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 737 | 35.14 | humidity | 80.0 | 720 | < th | dose independent | rect. | 10 | 12 |
| 742 | 35.14 | radiation | 10.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 754 | 35.15 | humidity | 80.0 | 720 | < th | dose independent | rect. | 14 | 1 |
| 757 | 35.15 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 11 |
| 769 | 35.16 | temperature | 15.0 | 270 | > th | dose independent | rect. | 4 | 13 |
| 794 | 35.18 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 813 | 35.19 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 840 | 35.20 | humidity | 80.0 | 720 | > th | dose independent | sin | 19 | NA |
| 842 | 35.20 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 864 | 35.21 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 11 |
| 869 | 35.21 | radiation | 1.0 | 720 | < th | dose independent | rect. | 24 | 23 |
| 892 | 35.22 | radiation | 1.0 | 90 | > th | dose independent | rect. | 13 | 23 |
| 894 | 35.22 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 902 | 35.23 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 917 | 35.23 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 927 | 35.24 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 14 |
| 931 | 35.24 | radiation | 1.0 | 720 | > th | dose independent | rect. | 12 | 23 |
| 938 | 35.25 | humidity | 80.0 | 720 | > th | dose independent | no | NA | NA |
| 946 | 35.25 | temperature | 20.0 | 10 | > th | dose independent | rect. | 19 | 10 |
| 947 | 35.25 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 11 |
| 949 | 35.25 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 11 |
| 953 | 35.25 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 13 |
| 966 | 35.26 | radiation | 1.0 | 90 | < th | dose independent | sin | 12 | NA |
| 988 | 35.27 | radiation | 1.0 | 720 | > th | dose independent | rect. | 6 | 10 |