BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0966400 Os01g0966400|AK103064
         (463 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0966400  Leucine-rich repeat, SDS22 containing protein       811   0.0  
Os10g0376200  Leucine-rich repeat, typical subtype containin...    70   3e-12

>Os01g0966400 Leucine-rich repeat, SDS22 containing protein
          Length = 463

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/463 (88%), Positives = 411/463 (88%)

Query: 1   MARLTVEQAKREAGSAGTLATSLNLSHRALSDVSCLSSFVNLERLDLGYNCLLTLEGLSN 60
           MARLTVEQAKREAGSAGTLATSLNLSHRALSDVSCLSSFVNLERLDLGYNCLLTLEGLSN
Sbjct: 1   MARLTVEQAKREAGSAGTLATSLNLSHRALSDVSCLSSFVNLERLDLGYNCLLTLEGLSN 60

Query: 61  CANLKWLSVIENKLVSLKGVEGLSKLQVLNAGKNKLKTMDEVKSLTSLGALILNDNNISS 120
           CANLKWLSVIENKLVSLKGVEGLSKLQVLNAGKNKLKTMDEVKSLTSLGALILNDNNISS
Sbjct: 61  CANLKWLSVIENKLVSLKGVEGLSKLQVLNAGKNKLKTMDEVKSLTSLGALILNDNNISS 120

Query: 121 ICKLDQLHQLNTLVLSKNPIFTIGDXXXXXXXXXXXXXXHCQIEKIGSSLTACVELKELR 180
           ICKLDQLHQLNTLVLSKNPIFTIGD              HCQIEKIGSSLTACVELKELR
Sbjct: 121 ICKLDQLHQLNTLVLSKNPIFTIGDALMKAKAMKKLSLSHCQIEKIGSSLTACVELKELR 180

Query: 181 LAHNKITTIPSDLAKNVKILNLDLGNNLIERRSDLEVLSELHYLRNLNLQGNPIAEKDGL 240
           LAHNKITTIPSDLAKNVKILNLDLGNNLIERRSDLEVLSELHYLRNLNLQGNPIAEKDGL
Sbjct: 181 LAHNKITTIPSDLAKNVKILNLDLGNNLIERRSDLEVLSELHYLRNLNLQGNPIAEKDGL 240

Query: 241 AKKVKKLVPNLRIFNSKPMEASSKSKNSREENLPINDADTPDDGPTDIYTXXXXXXXXXX 300
           AKKVKKLVPNLRIFNSKPMEASSKSKNSREENLPINDADTPDDGPTDIYT          
Sbjct: 241 AKKVKKLVPNLRIFNSKPMEASSKSKNSREENLPINDADTPDDGPTDIYTKKKGKGKHSK 300

Query: 301 XXXXXPEEPAGQSTRPDVTIAAPAKSELLDGKEMKKEKAAVEHXXXXXXXXXXXXXXXXH 360
                PEEPAGQSTRPDVTIAAPAKSELLDGKEMKKEKAAVEH                H
Sbjct: 301 QQIKSPEEPAGQSTRPDVTIAAPAKSELLDGKEMKKEKAAVEHVKNKKSKRKDDNSSVDH 360

Query: 361 TDKKVSKGAKRTKSAKKEEKNADGIDDTEMPFADLVFSGEGNNPELELKGKNQEIARDGK 420
           TDKKVSKGAKRTKSAKKEEKNADGIDDTEMPFADLVFSGEGNNPELELKGKNQEIARDGK
Sbjct: 361 TDKKVSKGAKRTKSAKKEEKNADGIDDTEMPFADLVFSGEGNNPELELKGKNQEIARDGK 420

Query: 421 FGGLVIDHTXXXXXXXGTVFGSSALEQLSSVPEVGSGALSGWD 463
           FGGLVIDHT       GTVFGSSALEQLSSVPEVGSGALSGWD
Sbjct: 421 FGGLVIDHTKKKKKAKGTVFGSSALEQLSSVPEVGSGALSGWD 463



>Os10g0376200 Leucine-rich repeat, typical subtype containing protein
          Length = 644

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 6/169 (3%)

Query: 96  LKTMDEVKSLTSLGALILNDNNISSICKLDQLHQLNTLVLSKNPIFTIGDXXXXXXXXXX 155
           LK +  +   +SL A+ L+ N I  I        L++L LS+N I  I +          
Sbjct: 410 LKVVPMIAPFSSLRAINLSGNFIVHISPGSLPKGLHSLDLSRNKIANI-EGLRELTKLRV 468

Query: 156 XXXXHCQIEKIGSSLTACVELKELRLAHNKITTIPSDLAKNVKILNLDLG-NNLIERRSD 214
               + +I +IG  L+ C  L+EL LA NKI+ +   L + +K+  LDLG N +   R+ 
Sbjct: 469 LNLSYNRISRIGHGLSGCTALRELYLAGNKISDV-EGLHRLLKLAVLDLGFNKVTTARAL 527

Query: 215 LEVLSELHYLRNLNLQGNPIAEK---DGLAKKVKKLVPNLRIFNSKPME 260
            ++++  H LR LNL GNP+      D L + V  L+P+L   N +P++
Sbjct: 528 GQLVANYHSLRALNLVGNPVQANVGDDALRRAVTGLLPHLAYLNKQPVK 576



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.130    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,769,435
Number of extensions: 475258
Number of successful extensions: 1804
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1798
Number of HSP's successfully gapped: 5
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 158 (65.5 bits)