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Os10g0376200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat, typical subtype containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0203) R2 : 0.594
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.27 (0.0517) R2dC : 0.537 R2C : 0.522
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.337 (0.0426) R2dN8 : 0.0717 R2N8 : 0.0567
σ : 0.382
deviance : 66.77
__
_____
C
peak time of C : 8.03
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.4 0.353 12.8 0.0179 1.27 -2.36 0.052 -6.3 0.344 8.06 19.9 5409 -- --
64.68 0.377 12.9 0.09 1.28 0.598 -0.0216 -- 0.372 8.13 19.9 5409 -- --
56.4 0.35 12.8 0.0132 1.26 -2.45 -- -6.53 0.346 8.07 19.8 5436 -- --
64.26 0.373 12.9 0.19 1.28 0.683 -- -- 0.38 7.99 16.08 7355 -- --
143.74 0.558 12.8 -0.0193 -- -2.69 -- -6.9 0.351 -- 19.7 5739 -- --
66.75 0.383 13 -0.00221 1.27 -- 0.0762 -- 0.337 8.01 -- -- -- --
66.77 0.383 13 4.61e-05 1.27 -- -- -- 0.337 8.03 -- -- -- --
151.52 0.573 13 0.27 -- 0.817 -- -- 0.436 -- 16.5 6595 -- --
64.88 0.375 12.9 -- 1.27 0.52 -- -- 0.358 8 15.57 7123 -- --
154.53 0.581 13 0.0122 -- -- -- -- 0.353 -- -- -- -- --
66.77 0.382 13 -- 1.27 -- -- -- 0.337 8.03 -- -- -- --
152.42 0.575 13 -- -- 0.616 -- -- 0.394 -- 15.69 6593 -- --
154.54 0.58 13 -- -- -- -- -- 0.351 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 48.80 radiation 1 1440 < th dose dependent rect. 13 3
9 50.11 wind 7 4320 > th dose independent rect. 17 2
10 50.37 wind 7 4320 < th dose independent rect. 17 2
13 50.48 radiation 1 1440 < th dose independent rect. 9 7
15 50.51 radiation 1 1440 < th dose independent rect. 11 5
20 50.80 radiation 1 1440 < th dose independent rect. 13 2
32 50.96 radiation 1 1440 > th dose independent rect. 11 5
35 51.02 radiation 1 1440 > th dose independent rect. 8 8
39 51.18 wind 5 4320 > th dose dependent rect. 18 1
99 52.60 humidity 60 14400 > th dose independent rect. 4 4
124 53.02 wind 5 4320 < th dose independent rect. 21 1
142 53.37 humidity 60 14400 > th dose independent rect. 22 10
151 53.48 humidity 80 14400 < th dose independent rect. 22 1
161 53.58 humidity 70 14400 < th dose dependent rect. 20 12
163 53.59 wind 5 4320 < th dose independent rect. 18 7
168 53.62 wind 5 4320 > th dose independent rect. 18 7
170 53.63 humidity 60 720 > th dose independent rect. 14 14
172 53.65 humidity 70 14400 < th dose independent rect. 20 12
174 53.66 temperature 20 30 > th dose independent rect. 20 8
183 53.77 wind 7 4320 > th dose independent rect. 15 15
193 53.85 wind 5 4320 > th dose independent rect. 21 1
197 53.89 radiation 1 1440 > th dose independent rect. 9 1
201 53.91 humidity 60 720 > th dose independent rect. 14 7
203 53.92 temperature 30 270 < th dose independent rect. 12 14
212 53.99 humidity 60 720 > th dose independent rect. 11 16
218 54.03 humidity 60 720 > th dose independent rect. 14 5
220 54.04 wind 7 4320 < th dose independent rect. 15 15
221 54.05 humidity 60 14400 > th dose independent rect. 24 8
240 54.15 humidity 60 720 > th dose independent rect. 9 18
277 54.29 humidity 60 720 > th dose independent sin 20 NA
299 54.40 wind 5 43200 < th dose independent rect. 11 3
305 54.42 temperature 30 720 < th dose independent rect. 9 18
312 54.44 humidity 60 720 > th dose independent rect. 11 9
347 54.55 temperature 30 720 < th dose independent rect. 7 20
348 54.55 humidity 70 14400 > th dose dependent rect. 3 4
351 54.57 humidity 60 720 > th dose independent rect. 16 1
367 54.60 humidity 50 14400 > th dose dependent rect. 5 1
368 54.60 wind 9 43200 > th dose dependent rect. 12 5
378 54.62 wind 5 43200 > th dose independent rect. 11 3
392 54.65 humidity 70 14400 < th dose dependent rect. 21 1
419 54.71 humidity 50 14400 > th dose independent rect. 18 16
423 54.72 humidity 50 14400 < th dose dependent rect. 10 1
431 54.75 humidity 50 270 > th dose dependent rect. 12 14
439 54.78 temperature 30 720 < th dose independent rect. 7 15
443 54.79 temperature 30 720 < th dose independent rect. 10 9
448 54.81 humidity 60 14400 < th dose independent rect. 6 1
450 54.81 humidity 60 14400 < th dose independent rect. 20 1
452 54.81 radiation 20 14400 > th dose independent rect. 17 1
507 54.81 humidity 60 14400 < th dose dependent rect. 6 1
511 54.81 radiation 20 14400 > th dose dependent rect. 17 1
575 54.86 temperature 30 720 < th dose independent rect. 9 12
587 54.91 wind 9 43200 > th dose independent rect. 12 5
592 54.92 radiation 10 720 < th dose dependent rect. 14 13
606 54.97 humidity 60 720 > th dose independent rect. 9 13
609 54.98 wind 5 43200 > th dose independent rect. 12 1
619 55.02 wind 5 720 > th dose independent rect. 15 4
641 55.03 wind 7 43200 > th dose dependent rect. 12 2
647 55.04 humidity 90 14400 < th dose dependent rect. 24 1
665 55.09 temperature 30 720 < th dose independent sin 21 NA
680 55.13 wind 5 43200 < th dose independent rect. 12 1
687 55.14 wind 9 43200 < th dose independent rect. 12 2
694 55.15 temperature 30 720 < th dose independent rect. 15 6
721 55.20 humidity 90 14400 < th dose dependent rect. 23 4
723 55.20 radiation 10 720 < th dose dependent rect. 11 16
727 55.21 wind 9 4320 < th dose dependent rect. 18 5
729 55.22 wind 9 43200 < th dose independent rect. 12 5
737 55.24 temperature 30 720 < th dose independent rect. 15 2
742 55.25 wind 9 43200 > th dose independent rect. 12 2
745 55.25 atmosphere 1015 10 < th dose dependent sin 7 NA
772 55.30 wind 7 4320 > th dose independent sin 14 NA
785 55.32 humidity 50 720 > th dose independent rect. 9 8
794 55.34 wind 5 720 > th dose independent rect. 15 8
811 55.36 wind 3 720 > th dose dependent rect. 15 4
818 55.38 wind 7 4320 < th dose independent sin 14 NA
856 55.44 humidity 50 14400 < th dose independent rect. 8 3
903 55.48 humidity 90 14400 < th dose dependent rect. 22 9
907 55.49 humidity 50 720 > th dose independent rect. 5 23
917 55.52 temperature 30 270 < th dose independent sin 15 NA
925 55.53 wind 9 4320 < th dose dependent rect. 18 7
938 55.55 temperature 30 720 < th dose independent sin 11 NA
960 55.57 wind 9 43200 < th dose independent rect. 14 3
962 55.57 wind 5 720 > th dose independent rect. 14 14
966 55.57 wind 9 4320 < th dose dependent rect. 17 10
979 55.60 wind 3 4320 > th dose dependent rect. 21 1