BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0966400 Os01g0966400|AK103064
(463 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22320.1 | chr5:7388175-7390426 REVERSE LENGTH=453 281 5e-76
AT5G19680.1 | chr5:6649663-6651564 FORWARD LENGTH=329 60 2e-09
AT1G78230.1 | chr1:29430226-29432516 FORWARD LENGTH=682 57 3e-08
AT4G03260.1 | chr4:1429092-1431431 FORWARD LENGTH=678 51 1e-06
>AT5G22320.1 | chr5:7388175-7390426 REVERSE LENGTH=453
Length = 452
Score = 281 bits (719), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 150/267 (56%), Positives = 196/267 (73%), Gaps = 2/267 (0%)
Query: 1 MARLTVEQAKREAGSAGTLAT-SLNLSHRALSDVSCLSSFVNLERLDLGYNCLLTLEGLS 59
M LTVEQ +E + + LNL H+AL+DVSCLS F NLE+LDL +N L L+GL
Sbjct: 1 MNSLTVEQVLKEKKTNDPDSVKELNLGHKALTDVSCLSKFKNLEKLDLRFNNLTDLQGLK 60
Query: 60 NCANLKWLSVIENKLVSLKGVEGLSKLQVLNAGKNKLKTMDEVKSLTSLGALILNDNNIS 119
+C NLKWLSV+ENKL SL G+E L+KL VLNAGKNKLK+M+E+ SL +L ALILNDN IS
Sbjct: 61 SCVNLKWLSVVENKLQSLNGIEALTKLTVLNAGKNKLKSMNEISSLVNLRALILNDNEIS 120
Query: 120 SICKLDQLHQLNTLVLSKNPIFTIGDXXXXXXXXXXXXXXHCQIEKIGSSLTACVELKEL 179
SICKLD L LN+LVLS+NPI IGD C+I+ IGSSL +C +LKEL
Sbjct: 121 SICKLDLLKDLNSLVLSRNPISEIGDSLSKLKNLSKISLSDCRIKAIGSSLKSCSDLKEL 180
Query: 180 RLAHNKITTIPSDLAKNVKILNLDLGNNLIERRSDLEVLSELHYLRNLNLQGNPIAEKDG 239
RLA+N+I +P++LA N ++LNLD+GNN+I + S LEVL L LRNLN++GNPI++ D
Sbjct: 181 RLANNEIKALPAELAVNKRLLNLDVGNNVITQLSGLEVLGTLSCLRNLNIRGNPISDNDK 240
Query: 240 LAKKVKK-LVPNLRIFNSKPMEASSKS 265
AKKV+ L+P++ +FN++P+E SS++
Sbjct: 241 SAKKVRTLLLPSVNVFNAQPLEKSSRN 267
>AT5G19680.1 | chr5:6649663-6651564 FORWARD LENGTH=329
Length = 328
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 13/240 (5%)
Query: 23 LNLSHRALSDVSCLSSFVNLERLDLGYNCLLTLEGLSNCAN-LKWLSVIENKLVSLKGVE 81
L L L+ V +S F L D+ +N + +LEG+S ++ LK L V +N++ + +E
Sbjct: 92 LVLRDNKLAKVPDVSIFTKLLVYDISFNEITSLEGISKASSTLKELYVSKNEVNKIMEIE 151
Query: 82 GLSKLQVLNAGKNKLKTMDEVKSLTSLGALILNDNNISSICKLDQLHQLNTLVLSKNPIF 141
L LQ+L G N+L+ M+ +++ T L L L N I + L L + + L N +
Sbjct: 152 HLHNLQILELGSNRLRVMENLENFTKLEELWLGRNRI-KVVNLCGLKCIKKISLQSNRLT 210
Query: 142 TIGDXXXXXXXXXXXXXXHCQIEKIGSSLTACVELKELRLAHNKITTIPSDLAKNVKILN 201
++ H I K+ L+A V L+ L +++NK+T++ D+ K+ +
Sbjct: 211 SMK-GFEECVALEELYLSHNGISKM-EGLSALVNLRVLDVSNNKLTSV-DDIQNLTKLED 267
Query: 202 LDLGNNLIERRSDLEVLSEL-----HYLRNLNLQGNPIAEKDGLAKKVKKLVPNLRIFNS 256
L L +N IE LE ++E L + L+ NP A+ V+++ PN+ +S
Sbjct: 268 LWLNDNQIE---SLEAITEAVTGSKEKLTTIYLENNPCAKSSDYVAAVRQIFPNVEQIDS 324
>AT1G78230.1 | chr1:29430226-29432516 FORWARD LENGTH=682
Length = 681
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 9/180 (5%)
Query: 96 LKTMDEVKSLTSLGALILNDNNISSICKLDQLHQLNTLVLSKNPIFTIGDXXXXXXXXXX 155
LK + + TSL ++ L++N I I L+ L LSKN I I +
Sbjct: 441 LKAIPSISHFTSLKSIDLSNNFIVQITPASLPKGLHALNLSKNKISVI-EGLRDLTRLRV 499
Query: 156 XXXXHCQIEKIGSSLTACVELKELRLAHNKITTIPSDLAKNVKILNLDLGNNLIERRSDL 215
+ +I +IG L+ C +KEL LA NKI+ + L + +K++ LDL N I +
Sbjct: 500 LDLSYNRISRIGQGLSNCTLIKELYLAGNKISNV-EGLHRLLKLIVLDLSFNKIATTKAI 558
Query: 216 -EVLSELHYLRNLNLQGNPIAE---KDGLAKKVKKLVPNLRIFNS---KPMEASSKSKNS 268
++++ + L LN+ GNPI +D L K V L+P L N KP A K+S
Sbjct: 559 GQLVANYNSLVALNILGNPIQNNVGEDQLRKTVSSLLPKLVYHNKQLIKPQRAREVLKDS 618
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 22 SLNLSHRALSDVSCLSSFVNLERLDLGYNCLLTL-EGLSNCANLKWLSVIENKLVSLKGV 80
+LNLS +S + L L LDL YN + + +GLSNC +K L + NK+ +++G+
Sbjct: 477 ALNLSKNKISVIEGLRDLTRLRVLDLSYNRISRIGQGLSNCTLIKELYLAGNKISNVEGL 536
Query: 81 EGLSKLQVLNAGKNKLKTMDEVKSLT----SLGALILNDNNISSICKLDQLHQLNTLVLS 136
L KL VL+ NK+ T + L SL AL + N I + DQL + + +L
Sbjct: 537 HRLLKLIVLDLSFNKIATTKAIGQLVANYNSLVALNILGNPIQNNVGEDQLRKTVSSLLP 596
Query: 137 K 137
K
Sbjct: 597 K 597
>AT4G03260.1 | chr4:1429092-1431431 FORWARD LENGTH=678
Length = 677
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 28/193 (14%)
Query: 69 VIENKLVSLKGVEGLSKLQVLNAGKNKLKTMDEVKSLTSLGALILNDNNISSICKLDQLH 128
++ + LV + + L+VLN N + + L AL L+ N+IS I L +L
Sbjct: 404 LVSHGLVVIPFLSAFVGLRVLNLSGNAIVRITAGALPRGLHALNLSKNSISVIEGLRELT 463
Query: 129 QLNTLVLSKNPIFTIGDXXXXXXXXXXXXXXHCQIEKIGSSLTACVELKELRLAHNKITT 188
+L L LS N I ++G L +C LKEL LA NKI+
Sbjct: 464 RLRVLDLSYNRIL-----------------------RLGHGLASCSSLKELYLAGNKISE 500
Query: 189 IPSDLAKNVKILNLDLGNNLIERRSDL-EVLSELHYLRNLNLQGNPIAEKDG---LAKKV 244
I L + +K+ LDL N L ++ + L+ ++L+GNP + G L K +
Sbjct: 501 IEG-LHRLLKLTVLDLRFNKFSTTKCLGQLAANYSSLQAISLEGNPAQKNVGDEQLRKYL 559
Query: 245 KKLVPNLRIFNSK 257
L+PNL +N +
Sbjct: 560 LGLLPNLVYYNRQ 572
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Query: 6 VEQAKREAGSAGTLATSLNLSHRALSDVSCLSSFVNLERLDLGYNCLLTLEGLSNCANLK 65
+E AK+ S AT+ L L + LS+FV L L+L N ++ + + L
Sbjct: 385 MEAAKKYISSLSASATTAQLVSHGLVVIPFLSAFVGLRVLNLSGNAIVRITAGALPRGLH 444
Query: 66 WLSVIENKLVSLKGVEGLSKLQVLNAGKNK-LKTMDEVKSLTSLGALILNDNNISSICKL 124
L++ +N + ++G+ L++L+VL+ N+ L+ + S +SL L L N IS I L
Sbjct: 445 ALNLSKNSISVIEGLRELTRLRVLDLSYNRILRLGHGLASCSSLKELYLAGNKISEIEGL 504
Query: 125 DQLHQLNTLVLSKNPIFT 142
+L +L L L N T
Sbjct: 505 HRLLKLTVLDLRFNKFST 522
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.130 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,606,475
Number of extensions: 337725
Number of successful extensions: 1363
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1351
Number of HSP's successfully gapped: 13
Length of query: 463
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 361
Effective length of database: 8,310,137
Effective search space: 2999959457
Effective search space used: 2999959457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 113 (48.1 bits)