BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0361900 Os10g0361900|Os10g0361900
(163 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0361900 Lipoxygenase, LH2 domain containing protein 318 1e-87
Os10g0361000 Lipoxygenase, LH2 domain containing protein 292 8e-80
Os10g0361350 Lipoxygenase, LH2 domain containing protein 264 3e-71
Os06g0221300 Similar to Dehydration stress-induced protein 118 1e-27
Os04g0456300 112 2e-25
Os02g0753300 Lipoxygenase, LH2 domain containing protein 108 2e-24
Os04g0456200 Similar to TMV induced protein 1-2 103 8e-23
Os04g0456700 Similar to TMV induced protein 1-2 102 8e-23
>Os10g0361900 Lipoxygenase, LH2 domain containing protein
Length = 163
Score = 318 bits (815), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 154/163 (94%), Positives = 154/163 (94%)
Query: 1 MNKLSLALASYLILFLXXXXXXXXXRCTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLT 60
MNKLSLALASYLILFL RCTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLT
Sbjct: 1 MNKLSLALASYLILFLAAAATAATTRCTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLT 60
Query: 61 VANLESWGQMAAGHDYFEKGNLDRFRGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVT 120
VANLESWGQMAAGHDYFEKGNLDRFRGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVT
Sbjct: 61 VANLESWGQMAAGHDYFEKGNLDRFRGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVT 120
Query: 121 QLGQGRLPSMTHRWAVDQWLAIDEAPHMLTAERRGCGIGAAAP 163
QLGQGRLPSMTHRWAVDQWLAIDEAPHMLTAERRGCGIGAAAP
Sbjct: 121 QLGQGRLPSMTHRWAVDQWLAIDEAPHMLTAERRGCGIGAAAP 163
>Os10g0361000 Lipoxygenase, LH2 domain containing protein
Length = 164
Score = 292 bits (747), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 139/161 (86%), Positives = 144/161 (89%), Gaps = 2/161 (1%)
Query: 3 KLSLALASYLILFLXXXXXXXXXRCTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLTVA 62
KLS+ALA +L F +CTFEI+VKTDGRRNAGTDARVSLQVRAA GPTLT+
Sbjct: 6 KLSIALACFL--FFLAAATTASAQCTFEILVKTDGRRNAGTDARVSLQVRAASGPTLTIT 63
Query: 63 NLESWGQMAAGHDYFEKGNLDRFRGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQL 122
NLESWGQMAAGHDYFEKGNLDRFRGAG CMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQL
Sbjct: 64 NLESWGQMAAGHDYFEKGNLDRFRGAGACMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQL 123
Query: 123 GQGRLPSMTHRWAVDQWLAIDEAPHMLTAERRGCGIGAAAP 163
GQG LPSMTHRWAVDQWLAIDEAPHMLTAERRGCGIGAAAP
Sbjct: 124 GQGSLPSMTHRWAVDQWLAIDEAPHMLTAERRGCGIGAAAP 164
>Os10g0361350 Lipoxygenase, LH2 domain containing protein
Length = 163
Score = 264 bits (674), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 122/138 (88%), Positives = 127/138 (92%)
Query: 26 RCTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLTVANLESWGQMAAGHDYFEKGNLDRF 85
+CTFEI+VKTDGR AGT+ARVSLQVRAA GPTLT+ NLESWGQMAA HDYFEKGNLDRF
Sbjct: 26 QCTFEILVKTDGRWYAGTNARVSLQVRAASGPTLTITNLESWGQMAASHDYFEKGNLDRF 85
Query: 86 RGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGRLPSMTHRWAVDQWLAIDEA 145
RG GDCMPSEPCNMVLTSDGSGN PGWYVSYVMVTQLGQG LPSMTHRWAVDQWLAIDE
Sbjct: 86 RGTGDCMPSEPCNMVLTSDGSGNMPGWYVSYVMVTQLGQGSLPSMTHRWAVDQWLAIDEP 145
Query: 146 PHMLTAERRGCGIGAAAP 163
PHMLTAER+GCGIGA P
Sbjct: 146 PHMLTAERKGCGIGAVVP 163
>Os06g0221300 Similar to Dehydration stress-induced protein
Length = 171
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 83/137 (60%), Gaps = 2/137 (1%)
Query: 27 CTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLTVANLESWGQ-MAAGHDYFEKGNLDRF 85
C + + V+T GTD+ + ++ A G + +A+LE WG M AGHDY+E+GNLD F
Sbjct: 36 CVYTVFVRTGSAWKGGTDSTIGVEFAGADGRGVRIADLERWGGLMGAGHDYYERGNLDVF 95
Query: 86 RGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGRLPSMTHRWAVDQWLAIDEA 145
G G C+P+ PC M LTSDG+G GWY +YV VT G R R+ V+QWLA D +
Sbjct: 96 SGRGPCLPAAPCWMNLTSDGAGAHHGWYCNYVEVTATGPHR-GCAQRRFDVEQWLATDAS 154
Query: 146 PHMLTAERRGCGIGAAA 162
P+ LTA R C AAA
Sbjct: 155 PYRLTAVRDQCRGHAAA 171
>Os04g0456300
Length = 190
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 26 RCTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLTVANLESWGQ-MAAGHDYFEKGNLDR 84
C + + V+T AGTDA + +++ AA G V +LE WG M AGHDY+E+GN+D
Sbjct: 49 ECVYTLYVETGWIWKAGTDAAIGVELAAADGSGFAVGDLERWGGLMGAGHDYYERGNVDV 108
Query: 85 FRGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGRLPSMTHRWAVDQWLAIDE 144
F G C+PS PC M LTSDG+G GWY V VT G + V+QWLA D
Sbjct: 109 FSGRAPCLPSPPCRMNLTSDGAGAHHGWYCKSVEVTATGP-HAGCAKAAFDVEQWLATDA 167
Query: 145 APHMLTAERRGC 156
P+ L AER C
Sbjct: 168 PPYQLYAERSVC 179
>Os02g0753300 Lipoxygenase, LH2 domain containing protein
Length = 193
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 26 RCTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLTVANLESWGQ-MAAGHDYFEKGNLDR 84
C + + ++T AGTDA ++L++ A G + + +L SWG M GH YFE+GNLD
Sbjct: 53 ECVYTVYIRTGSIWKAGTDANITLELAGADGNGVGITDLPSWGGLMGEGHSYFERGNLDI 112
Query: 85 FRGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGRLPSMTHRWAVDQWLAIDE 144
F G G CM + PC M + SDG+G GWY +YV VT G + + V+QWLA D
Sbjct: 113 FSGRGPCMAAPPCWMRVASDGTGPHHGWYCNYVEVTVTGAHK-GCAQQLFTVEQWLATDA 171
Query: 145 APHMLTAERRGC 156
AP+ L A R C
Sbjct: 172 APYKLEAIRDKC 183
>Os04g0456200 Similar to TMV induced protein 1-2
Length = 184
Score = 103 bits (256), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 26 RCTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLTVANLESWGQ-MAAGHDYFEKGNLDR 84
+C + + V+T AGTDA + +++ A G + + NL++WG MAAGHDYFE+ N+D
Sbjct: 40 QCVYTLYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAAGHDYFERSNVDI 99
Query: 85 FRGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGRLPSMTHRWAVD--QWLAI 142
F G G C+ + C M L S+G+G GW+ V VT G + +R A D QWLA
Sbjct: 100 FSGRGPCLGAPVCRMKLVSNGAGEHHGWFCKSVEVTVAGP---HARCNRAAFDVQQWLAT 156
Query: 143 DEAPHMLTAERRGCG 157
D P+ L AER CG
Sbjct: 157 DAPPYQLYAERSVCG 171
>Os04g0456700 Similar to TMV induced protein 1-2
Length = 193
Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 73/132 (55%), Gaps = 2/132 (1%)
Query: 26 RCTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLTVANLESWGQ-MAAGHDYFEKGNLDR 84
+C + I V+T GTD+ + + + A G + + +LE WG M GHDY+E+GNLD
Sbjct: 44 KCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGNLDI 103
Query: 85 FRGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGRLPSMTHRWAVDQWLAIDE 144
F G G CM PC M LTSDG+G GWY +Y+ T G L + V+QWLA D
Sbjct: 104 FSGRGPCMRQAPCRMNLTSDGTGPHHGWYCNYLEATVTGP-HLGCAQQLFTVEQWLATDA 162
Query: 145 APHMLTAERRGC 156
+P+ L A C
Sbjct: 163 SPYRLYAVVDNC 174
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,555,117
Number of extensions: 236323
Number of successful extensions: 442
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 8
Length of query: 163
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 70
Effective length of database: 12,179,899
Effective search space: 852592930
Effective search space used: 852592930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)