Os04g0456700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TMV induced protein 1-2.
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Os04g0456700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TMV induced protein 1-2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.59 | 0.4 | 14.1 | -1.62 | 0.336 | -0.478 | 2.51 | 1.34 | 0.0282 | 4.2 | 84.66 | 852 | -- | -- |
| 76.11 | 0.406 | 14.1 | -1.56 | 0.353 | -0.518 | 2.66 | -- | 0.0415 | 4.83 | 84.27 | 851 | -- | -- |
| 80.56 | 0.418 | 14.1 | -1.63 | 0.61 | -0.341 | -- | 2.19 | 0.0527 | 4.1 | 82.49 | 365 | -- | -- |
| 92.77 | 0.449 | 14.1 | -1.5 | 0.468 | -0.581 | -- | -- | 0.011 | 6 | 84.75 | 823 | -- | -- |
| 90.82 | 0.444 | 14.1 | -1.69 | -- | 0.0645 | -- | 2.25 | 0.0859 | -- | 82.21 | 327 | -- | -- |
| 85.16 | 0.433 | 14.1 | -1.53 | 0.336 | -- | 2.42 | -- | 0.0798 | 4.24 | -- | -- | -- | -- |
| 100.72 | 0.47 | 14.1 | -1.56 | 0.359 | -- | -- | -- | 0.0666 | 3.09 | -- | -- | -- | -- |
| 98.69 | 0.463 | 14.1 | -1.49 | -- | -0.646 | -- | -- | 0.0245 | -- | 84 | 1099 | -- | -- |
| 153.84 | 0.578 | 14.1 | -- | 0.463 | -0.66 | -- | -- | 0.187 | 6.16 | 84 | 853 | -- | -- |
| 108.07 | 0.486 | 14.1 | -1.54 | -- | -- | -- | -- | 0.076 | -- | -- | -- | -- | -- |
| 164.51 | 0.6 | 14.1 | -- | 0.328 | -- | -- | -- | 0.24 | 3.08 | -- | -- | -- | -- |
| 155.68 | 0.581 | 14.1 | -- | -- | -0.66 | -- | -- | 0.166 | -- | 87 | 1012 | -- | -- |
| 170.66 | 0.61 | 14.1 | -- | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.32 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 2 | 72.28 | humidity | 80 | 720 | > th | dose dependent | sin | 23 | NA |
| 3 | 72.61 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 19 | 72.61 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 35 | 72.65 | humidity | 80 | 720 | > th | dose dependent | rect. | 5 | 16 |
| 37 | 72.79 | humidity | 80 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 43 | 73.05 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 44 | 73.09 | radiation | 10 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 50 | 73.25 | humidity | 80 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 51 | 73.32 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 11 |
| 53 | 73.36 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 59 | 73.46 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 64 | 73.49 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 69 | 73.55 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 20 |
| 72 | 73.63 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 76 | 73.64 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 100 | 73.83 | temperature | 25 | 90 | > th | dose dependent | sin | 23 | NA |
| 106 | 73.89 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 148 | 74.17 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 166 | 74.23 | humidity | 80 | 720 | > th | dose dependent | rect. | 7 | 10 |
| 182 | 74.28 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 184 | 74.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 191 | 74.34 | humidity | 70 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 206 | 74.43 | humidity | 70 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 248 | 74.57 | radiation | 1 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 253 | 74.58 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 257 | 74.59 | radiation | 10 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 258 | 74.59 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 282 | 74.68 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 290 | 74.71 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 296 | 74.72 | radiation | 20 | 4320 | < th | dose dependent | rect. | 15 | 8 |
| 305 | 74.74 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 347 | 74.80 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 362 | 74.80 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 374 | 74.80 | radiation | 10 | 720 | < th | dose dependent | rect. | 5 | 12 |
| 390 | 74.83 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 19 |
| 429 | 74.90 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 442 | 74.91 | radiation | 10 | 720 | < th | dose dependent | rect. | 4 | 22 |
| 535 | 75.03 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 598 | 75.11 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 616 | 75.14 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 22 |
| 619 | 75.15 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 16 |
| 643 | 75.16 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 18 |
| 655 | 75.20 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 14 |
| 661 | 75.21 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 674 | 75.22 | humidity | 70 | 43200 | < th | dose dependent | rect. | 18 | 15 |
| 698 | 75.24 | wind | 9 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 730 | 75.28 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 763 | 75.28 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 769 | 75.28 | radiation | 30 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 801 | 75.29 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 809 | 75.30 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 883 | 75.35 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 11 |
| 904 | 75.38 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 21 |
| 906 | 75.38 | humidity | 80 | 720 | > th | dose dependent | sin | 17 | NA |
| 929 | 75.40 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 963 | 75.43 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 22 |
| 977 | 75.45 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |