BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0456700 Os04g0456700|AK065178
(193 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0456700 Similar to TMV induced protein 1-2 315 9e-87
Os06g0221300 Similar to Dehydration stress-induced protein 223 7e-59
Os02g0753300 Lipoxygenase, LH2 domain containing protein 211 2e-55
Os04g0456300 206 1e-53
Os04g0456200 Similar to TMV induced protein 1-2 183 7e-47
Os10g0361000 Lipoxygenase, LH2 domain containing protein 104 4e-23
Os10g0361350 Lipoxygenase, LH2 domain containing protein 102 1e-22
Os10g0361900 Lipoxygenase, LH2 domain containing protein 102 1e-22
Os03g0594500 84 9e-17
Os02g0547300 Conserved hypothetical protein 73 1e-13
Os11g0461600 73 1e-13
>Os04g0456700 Similar to TMV induced protein 1-2
Length = 193
Score = 315 bits (808), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 157/193 (81%), Positives = 157/193 (81%)
Query: 1 MAKLSCLLIVSFXXXXXXXXXXXXXXXXXXXXXXXXXSSDPENKCVYTIYVRTGTIWKGG 60
MAKLSCLLIVSF SSDPENKCVYTIYVRTGTIWKGG
Sbjct: 1 MAKLSCLLIVSFAVVAALAATDDDAAAAAEGITVAEASSDPENKCVYTIYVRTGTIWKGG 60
Query: 61 TDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGNLDIFSGRGPCMRQAPCRMNL 120
TDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGNLDIFSGRGPCMRQAPCRMNL
Sbjct: 61 TDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGNLDIFSGRGPCMRQAPCRMNL 120
Query: 121 TSDGTGPHHGWYCNYLEATVTGPHLGCAQQLFTVEQWLATDASPYRLYAVVDNCNXXXXX 180
TSDGTGPHHGWYCNYLEATVTGPHLGCAQQLFTVEQWLATDASPYRLYAVVDNCN
Sbjct: 121 TSDGTGPHHGWYCNYLEATVTGPHLGCAQQLFTVEQWLATDASPYRLYAVVDNCNKAKDA 180
Query: 181 XXXXXXEPRVTVL 193
EPRVTVL
Sbjct: 181 AAADADEPRVTVL 193
>Os06g0221300 Similar to Dehydration stress-induced protein
Length = 171
Score = 223 bits (568), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 103/134 (76%), Positives = 110/134 (82%)
Query: 42 ENKCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGNL 101
E CVYT++VRTG+ WKGGTDS IGV GADG GVRI DLERWGGLMG GHDYYERGNL
Sbjct: 33 EYNCVYTVFVRTGSAWKGGTDSTIGVEFAGADGRGVRIADLERWGGLMGAGHDYYERGNL 92
Query: 102 DIFSGRGPCMRQAPCRMNLTSDGTGPHHGWYCNYLEATVTGPHLGCAQQLFTVEQWLATD 161
D+FSGRGPC+ APC MNLTSDG G HHGWYCNY+E T TGPH GCAQ+ F VEQWLATD
Sbjct: 93 DVFSGRGPCLPAAPCWMNLTSDGAGAHHGWYCNYVEVTATGPHRGCAQRRFDVEQWLATD 152
Query: 162 ASPYRLYAVVDNCN 175
ASPYRL AV D C
Sbjct: 153 ASPYRLTAVRDQCR 166
>Os02g0753300 Lipoxygenase, LH2 domain containing protein
Length = 193
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 95/132 (71%), Positives = 110/132 (83%)
Query: 44 KCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGNLDI 103
+CVYT+Y+RTG+IWK GTD+ I + L GADG+GV I DL WGGLMG+GH Y+ERGNLDI
Sbjct: 53 ECVYTVYIRTGSIWKAGTDANITLELAGADGNGVGITDLPSWGGLMGEGHSYFERGNLDI 112
Query: 104 FSGRGPCMRQAPCRMNLTSDGTGPHHGWYCNYLEATVTGPHLGCAQQLFTVEQWLATDAS 163
FSGRGPCM PC M + SDGTGPHHGWYCNY+E TVTG H GCAQQLFTVEQWLATDA+
Sbjct: 113 FSGRGPCMAAPPCWMRVASDGTGPHHGWYCNYVEVTVTGAHKGCAQQLFTVEQWLATDAA 172
Query: 164 PYRLYAVVDNCN 175
PY+L A+ D C+
Sbjct: 173 PYKLEAIRDKCS 184
>Os04g0456300
Length = 190
Score = 206 bits (523), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 103/133 (77%)
Query: 42 ENKCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGNL 101
+N+CVYT+YV TG IWK GTD+ IGV L ADGSG + DLERWGGLMG GHDYYERGN+
Sbjct: 47 KNECVYTLYVETGWIWKAGTDAAIGVELAAADGSGFAVGDLERWGGLMGAGHDYYERGNV 106
Query: 102 DIFSGRGPCMRQAPCRMNLTSDGTGPHHGWYCNYLEATVTGPHLGCAQQLFTVEQWLATD 161
D+FSGR PC+ PCRMNLTSDG G HHGWYC +E T TGPH GCA+ F VEQWLATD
Sbjct: 107 DVFSGRAPCLPSPPCRMNLTSDGAGAHHGWYCKSVEVTATGPHAGCAKAAFDVEQWLATD 166
Query: 162 ASPYRLYAVVDNC 174
A PY+LYA C
Sbjct: 167 APPYQLYAERSVC 179
>Os04g0456200 Similar to TMV induced protein 1-2
Length = 184
Score = 183 bits (465), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 98/136 (72%)
Query: 39 SDPENKCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYER 98
S N+CVYT+YV TG+IWK GTD+ IGV L A G+G+ IR+L+ WGGLM GHDY+ER
Sbjct: 35 STGSNQCVYTLYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAAGHDYFER 94
Query: 99 GNLDIFSGRGPCMRQAPCRMNLTSDGTGPHHGWYCNYLEATVTGPHLGCAQQLFTVEQWL 158
N+DIFSGRGPC+ CRM L S+G G HHGW+C +E TV GPH C + F V+QWL
Sbjct: 95 SNVDIFSGRGPCLGAPVCRMKLVSNGAGEHHGWFCKSVEVTVAGPHARCNRAAFDVQQWL 154
Query: 159 ATDASPYRLYAVVDNC 174
ATDA PY+LYA C
Sbjct: 155 ATDAPPYQLYAERSVC 170
>Os10g0361000 Lipoxygenase, LH2 domain containing protein
Length = 164
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 73/132 (55%), Gaps = 2/132 (1%)
Query: 44 KCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGNLDI 103
+C + I V+T GTD+ + + + A G + I +LE WG M GHDY+E+GNLD
Sbjct: 27 QCTFEILVKTDGRRNAGTDARVSLQVRAASGPTLTITNLESWGQ-MAAGHDYFEKGNLDR 85
Query: 104 FSGRGPCMRQAPCRMNLTSDGTGPHHGWYCNYLEATVTGP-HLGCAQQLFTVEQWLATDA 162
F G G CM PC M LTSDG+G GWY +Y+ T G L + V+QWLA D
Sbjct: 86 FRGAGACMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGSLPSMTHRWAVDQWLAIDE 145
Query: 163 SPYRLYAVVDNC 174
+P+ L A C
Sbjct: 146 APHMLTAERRGC 157
>Os10g0361350 Lipoxygenase, LH2 domain containing protein
Length = 163
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 44 KCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGNLDI 103
+C + I V+T W GT++ + + + A G + I +LE WG M HDY+E+GNLD
Sbjct: 26 QCTFEILVKTDGRWYAGTNARVSLQVRAASGPTLTITNLESWGQ-MAASHDYFEKGNLDR 84
Query: 104 FSGRGPCMRQAPCRMNLTSDGTGPHHGWYCNYLEATVTGP-HLGCAQQLFTVEQWLATDA 162
F G G CM PC M LTSDG+G GWY +Y+ T G L + V+QWLA D
Sbjct: 85 FRGTGDCMPSEPCNMVLTSDGSGNMPGWYVSYVMVTQLGQGSLPSMTHRWAVDQWLAIDE 144
Query: 163 SPYRLYAVVDNC 174
P+ L A C
Sbjct: 145 PPHMLTAERKGC 156
>Os10g0361900 Lipoxygenase, LH2 domain containing protein
Length = 163
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 73/132 (55%), Gaps = 2/132 (1%)
Query: 44 KCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGNLDI 103
+C + I V+T GTD+ + + + A G + + +LE WG M GHDY+E+GNLD
Sbjct: 26 RCTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLTVANLESWGQ-MAAGHDYFEKGNLDR 84
Query: 104 FSGRGPCMRQAPCRMNLTSDGTGPHHGWYCNYLEATVTGP-HLGCAQQLFTVEQWLATDA 162
F G G CM PC M LTSDG+G GWY +Y+ T G L + V+QWLA D
Sbjct: 85 FRGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGRLPSMTHRWAVDQWLAIDE 144
Query: 163 SPYRLYAVVDNC 174
+P+ L A C
Sbjct: 145 APHMLTAERRGC 156
>Os03g0594500
Length = 286
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 42 ENKCVYTIY-VRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGN 100
+NKCVY +Y + TG IWK GTD+ I V L ADGSG +RDLERWGGLMG HDYYER
Sbjct: 171 KNKCVYMLYYMGTGWIWKAGTDAAISVELTAADGSGFAVRDLERWGGLMGAEHDYYERAT 230
>Os02g0547300 Conserved hypothetical protein
Length = 187
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 42 ENKCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGNL 101
+N+ VYT+Y+ TG WK GTD+ + V ADGSG + DLE WGGLMG GHDYY R
Sbjct: 81 KNERVYTLYLETG--WKAGTDAAVDVEPAAADGSGFAVGDLEWWGGLMGAGHDYYVRAAA 138
Query: 102 DI-FSGRGPCMRQAPCRMNLTS 122
R P +PCR + S
Sbjct: 139 PPSLRHRTPTDAASPCRAFIFS 160
>Os11g0461600
Length = 106
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 39/55 (70%)
Query: 40 DPENKCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHD 94
+ +N+CVYT+YV TG IW GTD+ IGV L D SG + DLERWG LMG GHD
Sbjct: 52 NDKNECVYTLYVETGWIWMAGTDAAIGVELAAVDSSGFAVGDLERWGRLMGAGHD 106
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.140 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,374,907
Number of extensions: 291840
Number of successful extensions: 414
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 11
Length of query: 193
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 98
Effective length of database: 12,075,471
Effective search space: 1183396158
Effective search space used: 1183396158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)