Os04g0456200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TMV induced protein 1-2.
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Os04g0456200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TMV induced protein 1-2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.31 | 0.56 | 7.98 | 2.18 | 0.69 | 2.91 | 0.0657 | -1.87 | 0.246 | 9.22 | 26.81 | 1543 | -- | -- |
| 142.53 | 0.556 | 8.02 | 1.97 | 0.556 | 2.72 | 0.379 | -- | 0.188 | 8.02 | 25.27 | 2430 | -- | -- |
| 142.33 | 0.556 | 7.98 | 2.18 | 0.69 | 2.91 | -- | -1.85 | 0.245 | 9.23 | 26.8 | 1543 | -- | -- |
| 142.95 | 0.557 | 8.03 | 1.98 | 0.555 | 2.72 | -- | -- | 0.185 | 8.11 | 25.3 | 2431 | -- | -- |
| 152.06 | 0.574 | 7.97 | 2.55 | -- | 2.71 | -- | -2.8 | 0.283 | -- | 30.54 | 2161 | -- | -- |
| 274.67 | 0.777 | 8.18 | 0.865 | 0.69 | -- | 0.161 | -- | -0.518 | 9.43 | -- | -- | -- | -- |
| 274.76 | 0.776 | 8.18 | 0.872 | 0.688 | -- | -- | -- | -0.517 | 9.49 | -- | -- | -- | -- |
| 156.22 | 0.582 | 8.04 | 1.96 | -- | 2.82 | -- | -- | 0.206 | -- | 26.5 | 2209 | -- | -- |
| 218.9 | 0.689 | 8.1 | -- | 0.596 | 2.24 | -- | -- | -0.186 | 8.06 | 25.7 | 1244 | -- | -- |
| 302.62 | 0.813 | 8.2 | 0.867 | -- | -- | -- | -- | -0.515 | -- | -- | -- | -- | -- |
| 294.79 | 0.803 | 8.21 | -- | 0.687 | -- | -- | -- | -0.614 | 9.39 | -- | -- | -- | -- |
| 225.01 | 0.699 | 8.15 | -- | -- | 2.33 | -- | -- | -0.278 | -- | 31.54 | 708 | -- | -- |
| 322.45 | 0.838 | 8.22 | -- | -- | -- | -- | -- | -0.611 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 5 | 129.22 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 3 |
| 196 | 134.16 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 297 | 136.01 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 431 | 138.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 479 | 139.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 498 | 139.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 505 | 139.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 550 | 140.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 716 | 142.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 740 | 142.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 818 | 143.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 858 | 143.89 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 861 | 143.91 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |