BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0456200 Os04g0456200|Os04g0456200
(184 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G39730.1 | chr4:18432950-18433581 FORWARD LENGTH=182 172 1e-43
AT2G22170.1 | chr2:9427010-9427742 REVERSE LENGTH=184 170 5e-43
AT5G65158.1 | chr5:26030390-26030704 FORWARD LENGTH=105 125 1e-29
>AT4G39730.1 | chr4:18432950-18433581 FORWARD LENGTH=182
Length = 181
Score = 172 bits (435), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 96/131 (73%)
Query: 40 QCVYTLYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAAGHDYFERSNVDI 99
CVYT Y+ TGSIWKAGTD+ I +Y G+ I I+NLQAW GLM ++YFER N+DI
Sbjct: 28 DCVYTFYLRTGSIWKAGTDSIISARIYDKDGDYIGIKNLQAWAGLMGPDYNYFERGNLDI 87
Query: 100 FSGRGPCLGAPVCRMKLVSNGAGEHHGWFCKSVEVTVAGPHARCNRAAFDVQQWLATDAP 159
FSGR PCL +P+C + L S+G+G+HHGW+ VE+T AG HA+C+ F+++QWLATD
Sbjct: 88 FSGRAPCLPSPICALNLTSDGSGDHHGWYVNYVEITTAGVHAQCSTQDFEIEQWLATDTS 147
Query: 160 PYQLYAERSVC 170
PY+L A R+ C
Sbjct: 148 PYELTAVRNNC 158
>AT2G22170.1 | chr2:9427010-9427742 REVERSE LENGTH=184
Length = 183
Score = 170 bits (430), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 98/131 (74%)
Query: 40 QCVYTLYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAAGHDYFERSNVDI 99
CVYT ++ TGS +KAGTD+ I +Y G+ I IRNL+AWGGLM G++Y+ER N+DI
Sbjct: 30 DCVYTFFLRTGSTFKAGTDSIISARVYDKYGDYIGIRNLEAWGGLMGPGYNYYERGNLDI 89
Query: 100 FSGRGPCLGAPVCRMKLVSNGAGEHHGWFCKSVEVTVAGPHARCNRAAFDVQQWLATDAP 159
FSG+ PCL +PVC + L S+G+G+HHGW+ VEVT AG HA+C+ +FDV+QWLA+D
Sbjct: 90 FSGKAPCLPSPVCSLNLTSDGSGDHHGWYVNYVEVTTAGVHAKCSYQSFDVEQWLASDTS 149
Query: 160 PYQLYAERSVC 170
PY+L A R+ C
Sbjct: 150 PYELSAVRNNC 160
>AT5G65158.1 | chr5:26030390-26030704 FORWARD LENGTH=105
Length = 104
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 61 IGVELYTAAGNGILIRNLQAWGGLMAAGHDYFERSNVDIFSGRGPCLGAPVCRMKLVSNG 120
+ + LY + G +I +L +WGGLM HDYFER N+DIFSG G CL PVC M L S+G
Sbjct: 1 MSLRLYDSYGQDAVISDLVSWGGLMGPFHDYFERGNLDIFSGLGSCLSGPVCAMNLTSDG 60
Query: 121 AGEHHGWFCKSVEVTVAGPHAR-CNRAAFDVQQWLATDAPPYQL 163
+G+HHGW+C VEVT++ R C++ F+V+QWLA DA PY+L
Sbjct: 61 SGDHHGWYCNYVEVTMSESRRRSCSQEKFEVEQWLARDASPYEL 104
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,716,601
Number of extensions: 142222
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 3
Length of query: 184
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 92
Effective length of database: 8,584,297
Effective search space: 789755324
Effective search space used: 789755324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)