BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0456200 Os04g0456200|Os04g0456200
(184 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0456200 Similar to TMV induced protein 1-2 337 3e-93
Os04g0456300 229 1e-60
Os04g0456700 Similar to TMV induced protein 1-2 181 2e-46
Os02g0753300 Lipoxygenase, LH2 domain containing protein 177 3e-45
Os06g0221300 Similar to Dehydration stress-induced protein 177 5e-45
Os10g0361350 Lipoxygenase, LH2 domain containing protein 110 8e-25
Os10g0361000 Lipoxygenase, LH2 domain containing protein 110 8e-25
Os10g0361900 Lipoxygenase, LH2 domain containing protein 102 2e-22
Os03g0594500 82 3e-16
Os02g0547300 Conserved hypothetical protein 77 1e-14
Os11g0461600 76 1e-14
>Os04g0456200 Similar to TMV induced protein 1-2
Length = 184
Score = 337 bits (863), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 161/174 (92%), Positives = 161/174 (92%)
Query: 1 MAHKLLCFXXXXXXXXXXXXXTSEEDTGALLLPGSTGSNQCVYTLYVETGSIWKAGTDAA 60
MAHKLLCF TSEEDTGALLLPGSTGSNQCVYTLYVETGSIWKAGTDAA
Sbjct: 1 MAHKLLCFAALISMAALAAGATSEEDTGALLLPGSTGSNQCVYTLYVETGSIWKAGTDAA 60
Query: 61 IGVELYTAAGNGILIRNLQAWGGLMAAGHDYFERSNVDIFSGRGPCLGAPVCRMKLVSNG 120
IGVELYTAAGNGILIRNLQAWGGLMAAGHDYFERSNVDIFSGRGPCLGAPVCRMKLVSNG
Sbjct: 61 IGVELYTAAGNGILIRNLQAWGGLMAAGHDYFERSNVDIFSGRGPCLGAPVCRMKLVSNG 120
Query: 121 AGEHHGWFCKSVEVTVAGPHARCNRAAFDVQQWLATDAPPYQLYAERSVCGKIS 174
AGEHHGWFCKSVEVTVAGPHARCNRAAFDVQQWLATDAPPYQLYAERSVCGKIS
Sbjct: 121 AGEHHGWFCKSVEVTVAGPHARCNRAAFDVQQWLATDAPPYQLYAERSVCGKIS 174
>Os04g0456300
Length = 190
Score = 229 bits (583), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 124/179 (69%), Gaps = 8/179 (4%)
Query: 2 AHKLLCFXXXXXXXXXXXXXTSEEDTGALLLP--------GSTGSNQCVYTLYVETGSIW 53
A K LCF S+ G LP G N+CVYTLYVETG IW
Sbjct: 3 ADKFLCFAFASLVSMVVLAAGSKSPDGVAALPRRGQLVAGGDNDKNECVYTLYVETGWIW 62
Query: 54 KAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAAGHDYFERSNVDIFSGRGPCLGAPVCR 113
KAGTDAAIGVEL A G+G + +L+ WGGLM AGHDY+ER NVD+FSGR PCL +P CR
Sbjct: 63 KAGTDAAIGVELAAADGSGFAVGDLERWGGLMGAGHDYYERGNVDVFSGRAPCLPSPPCR 122
Query: 114 MKLVSNGAGEHHGWFCKSVEVTVAGPHARCNRAAFDVQQWLATDAPPYQLYAERSVCGK 172
M L S+GAG HHGW+CKSVEVT GPHA C +AAFDV+QWLATDAPPYQLYAERSVC K
Sbjct: 123 MNLTSDGAGAHHGWYCKSVEVTATGPHAGCAKAAFDVEQWLATDAPPYQLYAERSVCAK 181
>Os04g0456700 Similar to TMV induced protein 1-2
Length = 193
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 98/136 (72%)
Query: 35 STGSNQCVYTLYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAAGHDYFER 94
S N+CVYT+YV TG+IWK GTD+ IGV L A G+G+ IR+L+ WGGLM GHDY+ER
Sbjct: 39 SDPENKCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYER 98
Query: 95 SNVDIFSGRGPCLGAPVCRMKLVSNGAGEHHGWFCKSVEVTVAGPHARCNRAAFDVQQWL 154
N+DIFSGRGPC+ CRM L S+G G HHGW+C +E TV GPH C + F V+QWL
Sbjct: 99 GNLDIFSGRGPCMRQAPCRMNLTSDGTGPHHGWYCNYLEATVTGPHLGCAQQLFTVEQWL 158
Query: 155 ATDAPPYQLYAERSVC 170
ATDA PY+LYA C
Sbjct: 159 ATDASPYRLYAVVDNC 174
>Os02g0753300 Lipoxygenase, LH2 domain containing protein
Length = 193
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 81/131 (61%), Positives = 97/131 (74%)
Query: 40 QCVYTLYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAAGHDYFERSNVDI 99
+CVYT+Y+ TGSIWKAGTDA I +EL A GNG+ I +L +WGGLM GH YFER N+DI
Sbjct: 53 ECVYTVYIRTGSIWKAGTDANITLELAGADGNGVGITDLPSWGGLMGEGHSYFERGNLDI 112
Query: 100 FSGRGPCLGAPVCRMKLVSNGAGEHHGWFCKSVEVTVAGPHARCNRAAFDVQQWLATDAP 159
FSGRGPC+ AP C M++ S+G G HHGW+C VEVTV G H C + F V+QWLATDA
Sbjct: 113 FSGRGPCMAAPPCWMRVASDGTGPHHGWYCNYVEVTVTGAHKGCAQQLFTVEQWLATDAA 172
Query: 160 PYQLYAERSVC 170
PY+L A R C
Sbjct: 173 PYKLEAIRDKC 183
>Os06g0221300 Similar to Dehydration stress-induced protein
Length = 171
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 81/131 (61%), Positives = 95/131 (72%)
Query: 40 QCVYTLYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAAGHDYFERSNVDI 99
CVYT++V TGS WK GTD+ IGVE A G G+ I +L+ WGGLM AGHDY+ER N+D+
Sbjct: 35 NCVYTVFVRTGSAWKGGTDSTIGVEFAGADGRGVRIADLERWGGLMGAGHDYYERGNLDV 94
Query: 100 FSGRGPCLGAPVCRMKLVSNGAGEHHGWFCKSVEVTVAGPHARCNRAAFDVQQWLATDAP 159
FSGRGPCL A C M L S+GAG HHGW+C VEVT GPH C + FDV+QWLATDA
Sbjct: 95 FSGRGPCLPAAPCWMNLTSDGAGAHHGWYCNYVEVTATGPHRGCAQRRFDVEQWLATDAS 154
Query: 160 PYQLYAERSVC 170
PY+L A R C
Sbjct: 155 PYRLTAVRDQC 165
>Os10g0361350 Lipoxygenase, LH2 domain containing protein
Length = 163
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 40 QCVYTLYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAAGHDYFERSNVDI 99
QC + + V+T W AGT+A + +++ A+G + I NL++WG MAA HDYFE+ N+D
Sbjct: 26 QCTFEILVKTDGRWYAGTNARVSLQVRAASGPTLTITNLESWGQ-MAASHDYFEKGNLDR 84
Query: 100 FSGRGPCLGAPVCRMKLVSNGAGEHHGWFCKSVEVTVAGP---HARCNRAAFDVQQWLAT 156
F G G C+ + C M L S+G+G GW+ V VT G + +R A D QWLA
Sbjct: 85 FRGTGDCMPSEPCNMVLTSDGSGNMPGWYVSYVMVTQLGQGSLPSMTHRWAVD--QWLAI 142
Query: 157 DAPPYQLYAERSVCG 171
D PP+ L AER CG
Sbjct: 143 DEPPHMLTAERKGCG 157
>Os10g0361000 Lipoxygenase, LH2 domain containing protein
Length = 164
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 83/145 (57%), Gaps = 6/145 (4%)
Query: 30 LLLPGSTGSNQCVYTLYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAAGH 89
L +T S QC + + V+T AGTDA + +++ A+G + I NL++WG MAAGH
Sbjct: 17 FLAAATTASAQCTFEILVKTDGRRNAGTDARVSLQVRAASGPTLTITNLESWGQ-MAAGH 75
Query: 90 DYFERSNVDIFSGRGPCLGAPVCRMKLVSNGAGEHHGWFCKSVEVTVAGP---HARCNRA 146
DYFE+ N+D F G G C+ + C M L S+G+G GW+ V VT G + +R
Sbjct: 76 DYFEKGNLDRFRGAGACMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGSLPSMTHRW 135
Query: 147 AFDVQQWLATDAPPYQLYAERSVCG 171
A D QWLA D P+ L AER CG
Sbjct: 136 AVD--QWLAIDEAPHMLTAERRGCG 158
>Os10g0361900 Lipoxygenase, LH2 domain containing protein
Length = 163
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 40 QCVYTLYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAAGHDYFERSNVDI 99
+C + + V+T AGTDA + +++ A G + + NL++WG MAAGHDYFE+ N+D
Sbjct: 26 RCTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLTVANLESWGQ-MAAGHDYFEKGNLDR 84
Query: 100 FSGRGPCLGAPVCRMKLVSNGAGEHHGWFCKSVEVTVAGP---HARCNRAAFDVQQWLAT 156
F G G C+ + C M L S+G+G GW+ V VT G + +R A D QWLA
Sbjct: 85 FRGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGRLPSMTHRWAVD--QWLAI 142
Query: 157 DAPPYQLYAERSVCG 171
D P+ L AER CG
Sbjct: 143 DEAPHMLTAERRGCG 157
>Os03g0594500
Length = 286
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 28 GALLLPGSTGSNQCVYTLY-VETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMA 86
G L+ G N+CVY LY + TG IWKAGTDAAI VEL A G+G +R+L+ WGGLM
Sbjct: 161 GQLVDGGDNDKNKCVYMLYYMGTGWIWKAGTDAAISVELTAADGSGFAVRDLERWGGLMG 220
Query: 87 AGHDYFERSN 96
A HDY+ER+
Sbjct: 221 AEHDYYERAT 230
>Os02g0547300 Conserved hypothetical protein
Length = 187
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 28 GALLLPGSTGSNQCVYTLYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAA 87
G L+ G N+ VYTLY+ETG WKAGTDAA+ VE A G+G + +L+ WGGLM A
Sbjct: 71 GQLVAGGDNDKNERVYTLYLETG--WKAGTDAAVDVEPAAADGSGFAVGDLEWWGGLMGA 128
Query: 88 GHDYFERSNVDI-FSGRGPCLGAPVCRMKLVSN 119
GHDY+ R+ R P A CR + S
Sbjct: 129 GHDYYVRAAAPPSLRHRTPTDAASPCRAFIFSR 161
>Os11g0461600
Length = 106
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 43/63 (68%)
Query: 28 GALLLPGSTGSNQCVYTLYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAA 87
G L+ G N+CVYTLYVETG IW AGTDAAIGVEL +G + +L+ WG LM A
Sbjct: 44 GQLVAGGDNDKNECVYTLYVETGWIWMAGTDAAIGVELAAVDSSGFAVGDLERWGRLMGA 103
Query: 88 GHD 90
GHD
Sbjct: 104 GHD 106
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,248,847
Number of extensions: 257719
Number of successful extensions: 423
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 11
Length of query: 184
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 89
Effective length of database: 12,075,471
Effective search space: 1074716919
Effective search space used: 1074716919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)