Os10g0361900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lipoxygenase, LH2 domain containing protein.
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Os10g0361900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lipoxygenase, LH2 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 163.47 | 0.601 | 3.08 | 0.389 | 0.146 | -0.608 | 0.0921 | 2.3 | 0.0857 | 9.56 | 18.7 | 5666 | -- | -- |
| 166.54 | 0.601 | 3.15 | 0.0708 | 0.154 | -0.863 | 0.00145 | -- | 0.0685 | 9.52 | 11.82 | 16106 | -- | -- |
| 163.43 | 0.595 | 3.08 | 0.428 | 0.149 | -0.602 | -- | 2.4 | 0.105 | 9.71 | 19 | 5939 | -- | -- |
| 166.43 | 0.601 | 3.14 | 0.0698 | 0.146 | -0.866 | -- | -- | 0.102 | 9.82 | 9.208 | 16094 | -- | -- |
| 164.67 | 0.598 | 3.07 | 0.442 | -- | -0.608 | -- | 2.4 | 0.126 | -- | 19.54 | 6399 | -- | -- |
| 177.97 | 0.625 | 3.22 | -0.59 | 0.154 | -- | 0.127 | -- | -0.257 | 10.1 | -- | -- | -- | -- |
| 178.03 | 0.625 | 3.22 | -0.585 | 0.153 | -- | -- | -- | -0.257 | 10 | -- | -- | -- | -- |
| 167.52 | 0.603 | 3.14 | 0.0863 | -- | -0.892 | -- | -- | 0.11 | -- | 10.2 | 16520 | -- | -- |
| 166.51 | 0.601 | 3.14 | -- | 0.144 | -0.822 | -- | -- | 0.0813 | 9.72 | 8.351 | 16081 | -- | -- |
| 179.44 | 0.626 | 3.22 | -0.587 | -- | -- | -- | -- | -0.257 | -- | -- | -- | -- | -- |
| 187.06 | 0.64 | 3.2 | -- | 0.156 | -- | -- | -- | -0.192 | 10.3 | -- | -- | -- | -- |
| 167.62 | 0.603 | 3.15 | -- | -- | -0.835 | -- | -- | 0.0816 | -- | 8.464 | 16514 | -- | -- |
| 188.54 | 0.641 | 3.21 | -- | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.25 | radiation | 1 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 2 | 158.28 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 17 |
| 3 | 158.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 4 | 158.43 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 5 | 158.81 | radiation | 1 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 6 | 158.83 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 8 | 158.90 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 10 | 158.91 | radiation | 20 | 270 | < th | dose independent | rect. | 8 | 19 |
| 20 | 159.17 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 21 | 159.17 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 32 | 159.28 | radiation | 30 | 270 | < th | dose dependent | rect. | 10 | 17 |
| 36 | 159.30 | radiation | 20 | 270 | < th | dose independent | rect. | 7 | 21 |
| 63 | 159.58 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 68 | 159.62 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 80 | 159.78 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 5 |
| 133 | 160.16 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 164 | 160.30 | humidity | 80 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 166 | 160.31 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 169 | 160.35 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 176 | 160.38 | humidity | 80 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 177 | 160.38 | radiation | 30 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 200 | 160.47 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 202 | 160.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 215 | 160.54 | temperature | 25 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 217 | 160.54 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 229 | 160.60 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 241 | 160.62 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 255 | 160.67 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 257 | 160.67 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 9 |
| 264 | 160.69 | wind | 5 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 276 | 160.72 | radiation | 20 | 270 | < th | dose independent | rect. | 8 | 8 |
| 283 | 160.74 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 284 | 160.74 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 285 | 160.74 | humidity | 80 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 296 | 160.77 | radiation | 1 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 324 | 160.81 | temperature | 25 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 338 | 160.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 419 | 160.88 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 427 | 160.90 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 14 |
| 468 | 160.94 | radiation | 1 | 14400 | > th | dose independent | sin | 21 | NA |
| 564 | 161.05 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 601 | 161.08 | temperature | 20 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 627 | 161.10 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 19 |
| 660 | 161.14 | radiation | 1 | 14400 | < th | dose independent | sin | 22 | NA |
| 744 | 161.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 16 |
| 759 | 161.21 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 780 | 161.22 | radiation | 1 | 43200 | < th | dose independent | sin | 18 | NA |
| 839 | 161.25 | radiation | 20 | 720 | < th | dose independent | rect. | 15 | 21 |
| 855 | 161.26 | radiation | 1 | 14400 | < th | dose dependent | sin | 22 | NA |
| 959 | 161.32 | temperature | 25 | 14400 | < th | dose independent | rect. | 12 | 6 |