BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0361900 Os10g0361900|Os10g0361900
(163 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G22170.1 | chr2:9427010-9427742 REVERSE LENGTH=184 110 3e-25
AT4G39730.1 | chr4:18432950-18433581 FORWARD LENGTH=182 107 3e-24
AT5G65158.1 | chr5:26030390-26030704 FORWARD LENGTH=105 90 6e-19
>AT2G22170.1 | chr2:9427010-9427742 REVERSE LENGTH=184
Length = 183
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Query: 27 CTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLTVANLESWG-QMAAGHDYFEKGNLDRF 85
C + ++T AGTD+ +S +V G + + NLE+WG M G++Y+E+GNLD F
Sbjct: 31 CVYTFFLRTGSTFKAGTDSIISARVYDKYGDYIGIRNLEAWGGLMGPGYNYYERGNLDIF 90
Query: 86 RGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGRLPSMTHRWAVDQWLAIDEA 145
G C+PS C++ LTSDGSG+ GWYV+YV VT G S + V+QWLA D +
Sbjct: 91 SGKAPCLPSPVCSLNLTSDGSGDHHGWYVNYVEVTTAGVHAKCSY-QSFDVEQWLASDTS 149
Query: 146 PHMLTAERRGCGI 158
P+ L+A R C +
Sbjct: 150 PYELSAVRNNCPV 162
>AT4G39730.1 | chr4:18432950-18433581 FORWARD LENGTH=182
Length = 181
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 27 CTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLTVANLESW-GQMAAGHDYFEKGNLDRF 85
C + ++T AGTD+ +S ++ G + + NL++W G M ++YFE+GNLD F
Sbjct: 29 CVYTFYLRTGSIWKAGTDSIISARIYDKDGDYIGIKNLQAWAGLMGPDYNYFERGNLDIF 88
Query: 86 RGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGRLPSMTHRWAVDQWLAIDEA 145
G C+PS C + LTSDGSG+ GWYV+YV +T G S T + ++QWLA D +
Sbjct: 89 SGRAPCLPSPICALNLTSDGSGDHHGWYVNYVEITTAGVHAQCS-TQDFEIEQWLATDTS 147
Query: 146 PHMLTAERRGCGI 158
P+ LTA R C +
Sbjct: 148 PYELTAVRNNCPV 160
>AT5G65158.1 | chr5:26030390-26030704 FORWARD LENGTH=105
Length = 104
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 47 VSLQVRAARGPTLTVANLESWGQ-MAAGHDYFEKGNLDRFRGAGDCMPSEPCNMVLTSDG 105
+SL++ + G +++L SWG M HDYFE+GNLD F G G C+ C M LTSDG
Sbjct: 1 MSLRLYDSYGQDAVISDLVSWGGLMGPFHDYFERGNLDIFSGLGSCLSGPVCAMNLTSDG 60
Query: 106 SGNKPGWYVSYVMVTQLGQGRLPSMTHRWAVDQWLAIDEAPHML 149
SG+ GWY +YV VT R ++ V+QWLA D +P+ L
Sbjct: 61 SGDHHGWYCNYVEVTMSESRRRSCSQEKFEVEQWLARDASPYEL 104
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,225,431
Number of extensions: 125724
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 3
Length of query: 163
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 72
Effective length of database: 8,611,713
Effective search space: 620043336
Effective search space used: 620043336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)