BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0456700 Os04g0456700|AK065178
(193 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G39730.1 | chr4:18432950-18433581 FORWARD LENGTH=182 174 3e-44
AT2G22170.1 | chr2:9427010-9427742 REVERSE LENGTH=184 173 5e-44
AT5G65158.1 | chr5:26030390-26030704 FORWARD LENGTH=105 124 2e-29
>AT4G39730.1 | chr4:18432950-18433581 FORWARD LENGTH=182
Length = 181
Score = 174 bits (440), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 97/135 (71%), Gaps = 2/135 (1%)
Query: 40 DPENKCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERG 99
DP+ CVYT Y+RTG+IWK GTDS+I + DG + I++L+ W GLMG ++Y+ERG
Sbjct: 26 DPD--CVYTFYLRTGSIWKAGTDSIISARIYDKDGDYIGIKNLQAWAGLMGPDYNYFERG 83
Query: 100 NLDIFSGRGPCMRQAPCRMNLTSDGTGPHHGWYCNYLEATVTGPHLGCAQQLFTVEQWLA 159
NLDIFSGR PC+ C +NLTSDG+G HHGWY NY+E T G H C+ Q F +EQWLA
Sbjct: 84 NLDIFSGRAPCLPSPICALNLTSDGSGDHHGWYVNYVEITTAGVHAQCSTQDFEIEQWLA 143
Query: 160 TDASPYRLYAVVDNC 174
TD SPY L AV +NC
Sbjct: 144 TDTSPYELTAVRNNC 158
>AT2G22170.1 | chr2:9427010-9427742 REVERSE LENGTH=184
Length = 183
Score = 173 bits (439), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 97/136 (71%)
Query: 39 SDPENKCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYER 98
+D E CVYT ++RTG+ +K GTDS+I + G + IR+LE WGGLMG G++YYER
Sbjct: 25 ADDEADCVYTFFLRTGSTFKAGTDSIISARVYDKYGDYIGIRNLEAWGGLMGPGYNYYER 84
Query: 99 GNLDIFSGRGPCMRQAPCRMNLTSDGTGPHHGWYCNYLEATVTGPHLGCAQQLFTVEQWL 158
GNLDIFSG+ PC+ C +NLTSDG+G HHGWY NY+E T G H C+ Q F VEQWL
Sbjct: 85 GNLDIFSGKAPCLPSPVCSLNLTSDGSGDHHGWYVNYVEVTTAGVHAKCSYQSFDVEQWL 144
Query: 159 ATDASPYRLYAVVDNC 174
A+D SPY L AV +NC
Sbjct: 145 ASDTSPYELSAVRNNC 160
>AT5G65158.1 | chr5:26030390-26030704 FORWARD LENGTH=105
Length = 104
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 65 IGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGNLDIFSGRGPCMRQAPCRMNLTSDG 124
+ + L + G I DL WGGLMG HDY+ERGNLDIFSG G C+ C MNLTSDG
Sbjct: 1 MSLRLYDSYGQDAVISDLVSWGGLMGPFHDYFERGNLDIFSGLGSCLSGPVCAMNLTSDG 60
Query: 125 TGPHHGWYCNYLEATVT-GPHLGCAQQLFTVEQWLATDASPYRL 167
+G HHGWYCNY+E T++ C+Q+ F VEQWLA DASPY L
Sbjct: 61 SGDHHGWYCNYVEVTMSESRRRSCSQEKFEVEQWLARDASPYEL 104
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.140 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,770,463
Number of extensions: 155700
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 3
Length of query: 193
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 100
Effective length of database: 8,556,881
Effective search space: 855688100
Effective search space used: 855688100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)