BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0361000 Os10g0361000|AK058583
(164 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0361000 Lipoxygenase, LH2 domain containing protein 295 1e-80
Os10g0361900 Lipoxygenase, LH2 domain containing protein 272 7e-74
Os10g0361350 Lipoxygenase, LH2 domain containing protein 263 6e-71
Os06g0221300 Similar to Dehydration stress-induced protein 113 8e-26
Os04g0456300 107 5e-24
Os02g0753300 Lipoxygenase, LH2 domain containing protein 105 1e-23
Os04g0456200 Similar to TMV induced protein 1-2 100 4e-22
Os04g0456700 Similar to TMV induced protein 1-2 99 1e-21
>Os10g0361000 Lipoxygenase, LH2 domain containing protein
Length = 164
Score = 295 bits (754), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 143/164 (87%), Positives = 143/164 (87%)
Query: 1 MKLTMKLSIXXXXXXXXXXXXXXXXXXXXXEILVKTDGRRNAGTDARVSLQVRAASGPTL 60
MKLTMKLSI EILVKTDGRRNAGTDARVSLQVRAASGPTL
Sbjct: 1 MKLTMKLSIALACFLFFLAAATTASAQCTFEILVKTDGRRNAGTDARVSLQVRAASGPTL 60
Query: 61 TITNLESWGQMAAGHDYFEKGNLDRFRGAGACMPSEPCNMVLTSDGSGNKPGWYVSYVMV 120
TITNLESWGQMAAGHDYFEKGNLDRFRGAGACMPSEPCNMVLTSDGSGNKPGWYVSYVMV
Sbjct: 61 TITNLESWGQMAAGHDYFEKGNLDRFRGAGACMPSEPCNMVLTSDGSGNKPGWYVSYVMV 120
Query: 121 TQLGQGSLPSMTHRWAVDQWLAIDEAPHMLTAERRGCGIGAAAP 164
TQLGQGSLPSMTHRWAVDQWLAIDEAPHMLTAERRGCGIGAAAP
Sbjct: 121 TQLGQGSLPSMTHRWAVDQWLAIDEAPHMLTAERRGCGIGAAAP 164
>Os10g0361900 Lipoxygenase, LH2 domain containing protein
Length = 163
Score = 272 bits (696), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 128/134 (95%), Positives = 130/134 (97%)
Query: 31 EILVKTDGRRNAGTDARVSLQVRAASGPTLTITNLESWGQMAAGHDYFEKGNLDRFRGAG 90
EI+VKTDGRRNAGTDARVSLQVRAA GPTLT+ NLESWGQMAAGHDYFEKGNLDRFRGAG
Sbjct: 30 EIVVKTDGRRNAGTDARVSLQVRAARGPTLTVANLESWGQMAAGHDYFEKGNLDRFRGAG 89
Query: 91 ACMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGSLPSMTHRWAVDQWLAIDEAPHML 150
CMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQG LPSMTHRWAVDQWLAIDEAPHML
Sbjct: 90 DCMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGRLPSMTHRWAVDQWLAIDEAPHML 149
Query: 151 TAERRGCGIGAAAP 164
TAERRGCGIGAAAP
Sbjct: 150 TAERRGCGIGAAAP 163
>Os10g0361350 Lipoxygenase, LH2 domain containing protein
Length = 163
Score = 263 bits (671), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 131/164 (79%), Positives = 134/164 (81%), Gaps = 1/164 (0%)
Query: 1 MKLTMKLSIXXXXXXXXXXXXXXXXXXXXXEILVKTDGRRNAGTDARVSLQVRAASGPTL 60
MKLTMKLS+ EILVKTDGR AGT+ARVSLQVRAASGPTL
Sbjct: 1 MKLTMKLSVAFAFFFFLAATTTAFAQCTF-EILVKTDGRWYAGTNARVSLQVRAASGPTL 59
Query: 61 TITNLESWGQMAAGHDYFEKGNLDRFRGAGACMPSEPCNMVLTSDGSGNKPGWYVSYVMV 120
TITNLESWGQMAA HDYFEKGNLDRFRG G CMPSEPCNMVLTSDGSGN PGWYVSYVMV
Sbjct: 60 TITNLESWGQMAASHDYFEKGNLDRFRGTGDCMPSEPCNMVLTSDGSGNMPGWYVSYVMV 119
Query: 121 TQLGQGSLPSMTHRWAVDQWLAIDEAPHMLTAERRGCGIGAAAP 164
TQLGQGSLPSMTHRWAVDQWLAIDE PHMLTAER+GCGIGA P
Sbjct: 120 TQLGQGSLPSMTHRWAVDQWLAIDEPPHMLTAERKGCGIGAVVP 163
>Os06g0221300 Similar to Dehydration stress-induced protein
Length = 171
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 32 ILVKTDGRRNAGTDARVSLQVRAASGPTLTITNLESWGQ-MAAGHDYFEKGNLDRFRGAG 90
+ V+T GTD+ + ++ A G + I +LE WG M AGHDY+E+GNLD F G G
Sbjct: 40 VFVRTGSAWKGGTDSTIGVEFAGADGRGVRIADLERWGGLMGAGHDYYERGNLDVFSGRG 99
Query: 91 ACMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGSLPSMTHRWAVDQWLAIDEAPHML 150
C+P+ PC M LTSDG+G GWY +YV VT G R+ V+QWLA D +P+ L
Sbjct: 100 PCLPAAPCWMNLTSDGAGAHHGWYCNYVEVTATGP-HRGCAQRRFDVEQWLATDASPYRL 158
Query: 151 TAERRGCGIGAAA 163
TA R C AAA
Sbjct: 159 TAVRDQCRGHAAA 171
>Os04g0456300
Length = 190
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Query: 32 ILVKTDGRRNAGTDARVSLQVRAASGPTLTITNLESWGQ-MAAGHDYFEKGNLDRFRGAG 90
+ V+T AGTDA + +++ AA G + +LE WG M AGHDY+E+GN+D F G
Sbjct: 54 LYVETGWIWKAGTDAAIGVELAAADGSGFAVGDLERWGGLMGAGHDYYERGNVDVFSGRA 113
Query: 91 ACMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGSLPSMTHRWAVDQWLAIDEAPHML 150
C+PS PC M LTSDG+G GWY V VT G + + V+QWLA D P+ L
Sbjct: 114 PCLPSPPCRMNLTSDGAGAHHGWYCKSVEVTATGPHA-GCAKAAFDVEQWLATDAPPYQL 172
Query: 151 TAERRGC 157
AER C
Sbjct: 173 YAERSVC 179
>Os02g0753300 Lipoxygenase, LH2 domain containing protein
Length = 193
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 77/129 (59%), Gaps = 6/129 (4%)
Query: 32 ILVKTDGRRNAGTDARVSLQVRAASGPTLTITNLESWG-QMAAGHDYFEKGNLDRFRGAG 90
+ ++T AGTDA ++L++ A G + IT+L SWG M GH YFE+GNLD F G G
Sbjct: 58 VYIRTGSIWKAGTDANITLELAGADGNGVGITDLPSWGGLMGEGHSYFERGNLDIFSGRG 117
Query: 91 ACMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLG--QGSLPSMTHRWAVDQWLAIDEAPH 148
CM + PC M + SDG+G GWY +YV VT G +G + + V+QWLA D AP+
Sbjct: 118 PCMAAPPCWMRVASDGTGPHHGWYCNYVEVTVTGAHKGCAQQL---FTVEQWLATDAAPY 174
Query: 149 MLTAERRGC 157
L A R C
Sbjct: 175 KLEAIRDKC 183
>Os04g0456200 Similar to TMV induced protein 1-2
Length = 184
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 32 ILVKTDGRRNAGTDARVSLQVRAASGPTLTITNLESWG-QMAAGHDYFEKGNLDRFRGAG 90
+ V+T AGTDA + +++ A+G + I NL++WG MAAGHDYFE+ N+D F G G
Sbjct: 45 LYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAAGHDYFERSNVDIFSGRG 104
Query: 91 ACMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGSLPSMTHRWAVD--QWLAIDEAPH 148
C+ + C M L S+G+G GW+ V VT G + +R A D QWLA D P+
Sbjct: 105 PCLGAPVCRMKLVSNGAGEHHGWFCKSVEVTVAGP---HARCNRAAFDVQQWLATDAPPY 161
Query: 149 MLTAERRGCG 158
L AER CG
Sbjct: 162 QLYAERSVCG 171
>Os04g0456700 Similar to TMV induced protein 1-2
Length = 193
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Query: 32 ILVKTDGRRNAGTDARVSLQVRAASGPTLTITNLESWG-QMAAGHDYFEKGNLDRFRGAG 90
I V+T GTD+ + + + A G + I +LE WG M GHDY+E+GNLD F G G
Sbjct: 49 IYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGNLDIFSGRG 108
Query: 91 ACMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGSLPSMTHRWAVDQWLAIDEAPHML 150
CM PC M LTSDG+G GWY +Y+ T G L + V+QWLA D +P+ L
Sbjct: 109 PCMRQAPCRMNLTSDGTGPHHGWYCNYLEATVTGP-HLGCAQQLFTVEQWLATDASPYRL 167
Query: 151 TAERRGC 157
A C
Sbjct: 168 YAVVDNC 174
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,251,042
Number of extensions: 222581
Number of successful extensions: 411
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 8
Length of query: 164
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 71
Effective length of database: 12,179,899
Effective search space: 864772829
Effective search space used: 864772829
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)