BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0135400 Os10g0135400|AK069878
(386 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0135400 Cyclin-like F-box domain containing protein 637 0.0
Os10g0135500 Cyclin-like F-box domain containing protein 340 1e-93
Os10g0135300 Cyclin-like F-box domain containing protein 236 2e-62
Os07g0555300 Conserved hypothetical protein 84 1e-16
Os07g0554100 84 2e-16
Os07g0554500 Cyclin-like F-box domain containing protein 83 3e-16
Os07g0555100 Conserved hypothetical protein 81 1e-15
Os04g0258900 Cyclin-like F-box domain containing protein 80 3e-15
Os02g0199600 Cyclin-like F-box domain containing protein 79 5e-15
Os07g0554900 Cyclin-like F-box domain containing protein 74 1e-13
>Os10g0135400 Cyclin-like F-box domain containing protein
Length = 386
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/386 (83%), Positives = 322/386 (83%)
Query: 1 MACSLLLTILPEELVVEXXXXXXXXXXXXXXXSACKPLRRLITSXXXXXXXXXXXXXXXX 60
MACSLLLTILPEELVVE SACKPLRRLITS
Sbjct: 1 MACSLLLTILPEELVVEILIRLTDLADLARAASACKPLRRLITSRAFLARLHALHAKPLL 60
Query: 61 XXXXXERDRCGFLPXXXXXXXXXXXXSDFAFSFLPDHAAGWRLRDVRHGXXXXXXXXXXX 120
ERDRCGFLP SDFAFSFLPDHAAGWRLRDVRHG
Sbjct: 61 GLLLLERDRCGFLPAATAVAAAVARASDFAFSFLPDHAAGWRLRDVRHGLALLSSSSSSS 120
Query: 121 XXXXXGDRGFFPDVVVCDPMRRRHVRVPPIPDDLTAGVRRIAVEHFDYLLAPAGRDGSSF 180
GDRGFFPDVVVCDPMRRRHVRVPPIPDDLTAGVRRIAVEHFDYLLAPAGRDGSSF
Sbjct: 121 YLSPLGDRGFFPDVVVCDPMRRRHVRVPPIPDDLTAGVRRIAVEHFDYLLAPAGRDGSSF 180
Query: 181 RVVCRPKLPKQCDVTVFVFSSGAAFWRAAVLDACAATEKLFLPQSVHGYVYWRTHSSGTL 240
RVVCRPKLPKQCDVTVFVFSSGAAFWRAAVLDACAATEKLFLPQSVHGYVYWRTHSSGTL
Sbjct: 181 RVVCRPKLPKQCDVTVFVFSSGAAFWRAAVLDACAATEKLFLPQSVHGYVYWRTHSSGTL 240
Query: 241 LMLDTRDMDFFFVNIQTNKCVIGEAEEVGRLAVFNTIVDVGVHKVEILSKAIRGGADEPW 300
LMLDTRDMDFFFVNIQTNKCVIGEAEEVGRLAVFNTIVDVGVHKVEILSKAIRGGADEPW
Sbjct: 241 LMLDTRDMDFFFVNIQTNKCVIGEAEEVGRLAVFNTIVDVGVHKVEILSKAIRGGADEPW 300
Query: 301 RHDRTIPLLPGYKWRAARMAEGYLLLHGIVGNNSWSTPGIQLQHFTLDLKTLKLESLCDS 360
RHDRTIPLLPGYKWRAARMAEGYLLLHGIVGNNSWSTPGIQLQHFTLDLKTLKLESLCDS
Sbjct: 301 RHDRTIPLLPGYKWRAARMAEGYLLLHGIVGNNSWSTPGIQLQHFTLDLKTLKLESLCDS 360
Query: 361 ISRGRHHHPQFDLYRSFPPPLSLSSI 386
ISRGRHHHPQFDLYRSFPPPLSLSSI
Sbjct: 361 ISRGRHHHPQFDLYRSFPPPLSLSSI 386
>Os10g0135500 Cyclin-like F-box domain containing protein
Length = 410
Score = 340 bits (872), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 207/397 (52%), Positives = 238/397 (59%), Gaps = 29/397 (7%)
Query: 12 EELVVEXXXXXXXXXXXXXXXSACKPLRRLITSXXXXXXXXXX--XXXXXXXXXXXERDR 69
+ELVVE SAC+ LRRLITS R
Sbjct: 21 QELVVEILIRLDDLADLARAASACRALRRLITSRAFLRRVHALHPRPLLGLLHLEHHGSR 80
Query: 70 CGFLPXX-----------XXXXXXXXXXSDFAFSFLPDHAAGWRLRDVRHGXXXXXXXXX 118
C FLP SD +FSFLP + WRLRDVRHG
Sbjct: 81 CRFLPAEPPHPSAATAAAVARAFDSDSDSDSSFSFLPGRSGDWRLRDVRHGLAVLSTRHA 140
Query: 119 XXXXXXXGDRGF-FPDVVVCDPMRRRHVRVPPIPDDLTAGVRR--IAVEHFDYLLAPAGR 175
D F FPDVVVC+P+RRR+ +PPI DDL A +R + VE FDYL+APAGR
Sbjct: 141 VT-----DDGCFSFPDVVVCNPLRRRYAWIPPISDDLAAPIRSLGVGVEDFDYLVAPAGR 195
Query: 176 DGSSFRVVCRPKLPKQCDVTVFVFSSGAAFWRAAVLDACAATEKLFLPQSVHGYVYWRTH 235
+G SFRV+CRP+LP CDVTVFVFSS A WRAA L ACAAT +L PQ HGY YWR
Sbjct: 196 EGLSFRVICRPQLPMGCDVTVFVFSSSAVIWRAATLHACAATAQLVSPQYAHGYAYWRLI 255
Query: 236 SSGT-LLMLDTRDMDFFFVNIQTNKC---VIGEAEEVGRLAVFNTIVDVGVHKVEILSKA 291
S T LL+LDTRDMDFFFV+ + IGEA EVGRLA+FN + H VE+LS A
Sbjct: 256 RSATRLLLLDTRDMDFFFVDFEQRSVPWQAIGEAGEVGRLAMFN--IAHANHTVELLSGA 313
Query: 292 IRGGADEPWRHDRTIPLLPGYKWRAARMAEGYLLLHG-IVGN-NSWSTPGIQLQHFTLDL 349
IRG ADE WRHD+TIPLLPGYKWR ++AEGYLLL G I+G+ S TPG QLQ+FTLD+
Sbjct: 314 IRGSADEHWRHDKTIPLLPGYKWRILKLAEGYLLLQGRILGDGTSQFTPGDQLQYFTLDI 373
Query: 350 KTLKLESLCDSISRGRHHHPQFDLYRSFPPPLSLSSI 386
T KLE LC S +G +HPQF+LYR FPPPLS SSI
Sbjct: 374 NTFKLERLCASTPQGISYHPQFELYRCFPPPLSFSSI 410
>Os10g0135300 Cyclin-like F-box domain containing protein
Length = 415
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 156/323 (48%), Positives = 190/323 (58%), Gaps = 37/323 (11%)
Query: 88 DFAFSFLPDHAAGWRLRDVRHGXXXXXXXXXXXXXXXXGDRGFFPDVVVCDPMRRRHVRV 147
D FSFLP GWRLR++R G G FFPDVVVCDP+ RR+ ++
Sbjct: 106 DLTFSFLPATPGGWRLRNIRRGLALLSTRDG-------GGGCFFPDVVVCDPLHRRYAQI 158
Query: 148 PPIPDDLTAGVRRIAV--EHFDYLLAPAGRD-------GSSFRVVCRPKLPKQCDVTVFV 198
P IPDDL A +RR + FDYLLAPA R+ SSF+VVCRP+L ++CD+TVFV
Sbjct: 159 PQIPDDLAAPIRRSGSLPKGFDYLLAPARREEEEEEEEDSSFKVVCRPRLTEECDITVFV 218
Query: 199 FSSGAAFWRAAVLDACAATEKLFL--PQSVHGYVYWRTHSSGTLLMLDTRDMDF-FFVN- 254
FSSGA WRAA L + AT P+ VH VYW T LL+LDT +M+ F N
Sbjct: 219 FSSGAGIWRAATLGSSLATAISVTSRPRCVHRCVYWLTRFLDRLLILDTDEMELSMFDNF 278
Query: 255 -------IQTNKCVIGEAEEVGRLAVFNTIVDVGVHKVEILSKAIRGGADEPWRHDRTIP 307
+ I EA E RL VFN + VH V +LS+AIRG ADE WRHD+TIP
Sbjct: 279 PPSTGFVLNHTTAAIAEAGE-DRLGVFN----LDVHNVNLLSRAIRGSADEQWRHDKTIP 333
Query: 308 LLPGYK-WRAARMA--EGYLLLHGIVGNNSWSTPGIQ-LQHFTLDLKTLKLESLCDSISR 363
LLPGY WR A +GY+LL G++G+ S P LQ+F+LDLKT +LE LC
Sbjct: 334 LLPGYSIWRFVNHADVDGYILLGGVLGSGLQSDPITDGLQYFSLDLKTFRLERLCPMTIY 393
Query: 364 GRHHHPQFDLYRSFPPPLSLSSI 386
+ P +LY SFPPPLSLSSI
Sbjct: 394 QARNSPT-ELYTSFPPPLSLSSI 415
>Os07g0555300 Conserved hypothetical protein
Length = 253
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 76/154 (49%), Gaps = 21/154 (13%)
Query: 133 DVVVCDPMRRRHVRVPPIPDDLTAGVRRIAVEHFDYLLAPAGRD------GSSFRVVCRP 186
D+ VCDP+ RR+V +PPIPDDL + + F+ LAPA ++ +SFRVV R
Sbjct: 3 DLAVCDPVSRRYVILPPIPDDLITSGEQEGLLVFETFLAPAAKEEEEMVGTTSFRVVARA 62
Query: 187 KLPKQCDVTVFVFSSGAAFWRAA------------VLDACAATEKLFLPQSVHGYVYWRT 234
+ V +FVFSS W ++ L + A F P+ +VYW
Sbjct: 63 NYESK--VVIFVFSSLTEEWHSSRSVSWSLLTADPWLSSTAQAHLWFFPRYYAHFVYWVM 120
Query: 235 HSSGTLLMLDTRDMDFFFVNIQTNK-CVIGEAEE 267
H LL+LDT M FF +N Q ++ I E EE
Sbjct: 121 HLVDMLLVLDTSKMAFFTINFQWDRDFAILETEE 154
>Os07g0554100
Length = 396
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 125/304 (41%), Gaps = 44/304 (14%)
Query: 91 FSFLPDHAAGWRLRDVRHGXXXXXXXXXXXXXXXXGDRGFFPDVVVCDPMRRRHVRVPPI 150
SFLP A W +RDVR G F ++ VCDP+RRR + +PPI
Sbjct: 99 LSFLPSPAGSWMVRDVRGGRVLVDRDTKAETGGSEKPL-VFTEIAVCDPLRRRFLLLPPI 157
Query: 151 PDDLTAGVRRIAVEHFDY----LLAP---AGRDGSSFRVVCRPKLPKQCDVTVFVFSSGA 203
PDDL A V R H D LAP D +SF+V+ + + + FVF+S
Sbjct: 158 PDDLAASVDRPVRVHLDRWCEPFLAPHIEEEEDDTSFKVIWMAQC--KAKIIAFVFNSST 215
Query: 204 AFWRAAVLDACAATEKLF---------------LPQSVHGYVYW-RTHSSG--------- 238
W A A +T LF L S G V+ R ++ G
Sbjct: 216 GQWLAG---ASPSTTDLFNGAGLSPPPSSSSPSLVFSSPGRVFSSRRYACGCFCWGILRT 272
Query: 239 TLLMLDTRDMDFFFVN----IQTNKCVIGEAEEVGRLAVFNTIVDVGVHKVEILSKAIRG 294
LL+LDTR M F I EA E G +F VG S +
Sbjct: 273 MLLVLDTRLMKFSIAEPPPVCLGGPTAIVEAGE-GMTGIFALRGSVGGTFDLHYSIWGKE 331
Query: 295 GADEPWRHDRTIPLLPGYKWRAARMAEGYLLLHGIVGNNSWSTPG-IQLQHFTLDLKTLK 353
GA + ++ IPL GY++ E +LLL G TP L+ F+LD+KTL+
Sbjct: 332 GATRREQMEKIIPLDHGYRYYIRGAMEKHLLLARSRGEGEEDTPEEPDLECFSLDVKTLQ 391
Query: 354 LESL 357
LE L
Sbjct: 392 LEPL 395
>Os07g0554500 Cyclin-like F-box domain containing protein
Length = 414
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 140/340 (41%), Gaps = 65/340 (19%)
Query: 87 SDFAFSFLPDHAAGWRLRDVRHGXXXXXXXXXXXXXXXXGDRGFFPDVV-VCDPMRRRHV 145
+DF FSFLP + W +RDV G G+ G ++ VCDP+ RR+
Sbjct: 100 ADFGFSFLPSPLS-WVVRDVLDGRFLLDRDG--------GEGGAALRILAVCDPLFRRYS 150
Query: 146 RVPPIPDDLTAGVRR------IAVEHFDYLLAPAG--------RDGSSFRVVCRPKLPKQ 191
+P IP+DL A VRR FD AP G +SF+V+ + P +
Sbjct: 151 LLPQIPEDLAASVRRRPRRGVAPNGRFDTFFAPIGEEERAAAAVAETSFKVIWIAQCPDK 210
Query: 192 CDVTVFVFSSGAAFWRAAVLDAC----------AATEKLFLPQSVHGYVYWRTHSSGTLL 241
+ FVFSS WRA C A L +G YW SG LL
Sbjct: 211 --LVAFVFSSVTGQWRATA-SPCWGDLSPAFSRPACRSLLRRSYAYGCFYWMMGDSGNLL 267
Query: 242 MLDTRDMDFFFVNIQTN-------KCVIGEAEEVGRLAVFNTIVDVGVHKVEILSKAIR- 293
+LD M+F V + ++ +C I EA E G++ +F + ++ +E+ S ++
Sbjct: 268 VLDMCKMNFSIVKLPSSPPGRDIVECAIVEAGE-GKIGMFAFCNCIDIYALELYSTTMQN 326
Query: 294 -GGADEPWRHDRTIPLLPGYKWRAARMAEGYLLLHGIVGN------NSWSTPGIQLQHFT 346
G W + I L+P +G+ +L G+ G + G L F+
Sbjct: 327 EGRVASKWSFESAI-LMPSR--------DGFRVL-GVTGKELCLQVSPICVSGCYLLEFS 376
Query: 347 LDLKTLKLESLCDSISRGRHHHPQFDLYRSFPPPLSLSSI 386
+ KLE + RG F LY +PP LS SI
Sbjct: 377 TNPSCKKLE-FVRRVIRGVRTSLPF-LYVGYPPSLSSPSI 414
>Os07g0555100 Conserved hypothetical protein
Length = 402
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 133/309 (43%), Gaps = 48/309 (15%)
Query: 87 SDFAFSFLP----DHAAGWRLRDVRHGXXXXXXXXXXXXXXXXGDRGFFP-----DVVVC 137
+DF + F+P + A GW D R G D G FP + VC
Sbjct: 79 ADFEYGFVPWVPEEEAWGWFPLDARDGRVLIQSKYFPDDP----DGGDFPRPRFMNYAVC 134
Query: 138 DPMRRRHVRVPPIPDDLTAGVRRIAVEHFDYLLAPAGRD--GSSFRVVCRPKLPKQCDVT 195
DP+ +R+V +PP+PDDLTA + F LAP+ D +SFRV+C + ++
Sbjct: 135 DPLFKRYVMLPPVPDDLTANEGSLV--DFGLCLAPSQEDEADTSFRVICVARY--NTNLV 190
Query: 196 VFVFSS--------GAAFWRAAVLDACAATEKLFLPQSVHGYVYWRTHSSGTLLMLDTRD 247
FVFSS ++ W + + L V G YW S+ +L+LD
Sbjct: 191 AFVFSSVTRQWGIGSSSTWSSLGTEEPPNRHGLSCFDCVDGCFYWTVPSADKILVLDAIK 250
Query: 248 MDFFFVNIQT------NKCVIGEAEEV-GRLAVFNTIVDVGVHKVEILSKAIRGGADEPW 300
M+F +N C+ + E G L V + + I ++ R +E
Sbjct: 251 MEFSVINYAHRVEDGFRACIAVDTEGTPGMLTVGEYLGNREFRFSRIAKQSDRESPNE-- 308
Query: 301 RHDRTIPLLPG--YKWRAARMAEGYLLLHGI-----VGNNS----WSTPGIQLQHFTLDL 349
R I LP K+ AEG++ L GI V ++S + P ++++++L++
Sbjct: 309 RLSENIIQLPSNCNKYFTLGAAEGFIFLRGIPEEEKVEDSSSEDLYMDPE-EIEYYSLNV 367
Query: 350 KTLKLESLC 358
KT++ E +C
Sbjct: 368 KTVEFEMVC 376
>Os04g0258900 Cyclin-like F-box domain containing protein
Length = 408
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 127/332 (38%), Gaps = 53/332 (15%)
Query: 92 SFLPDHAAGWRLRDVRHGXXXXXXXXXXXXXXXXGDRGFFPDVVVCDPMRRRHVRVPPIP 151
SFLP A W LRD R G G F DV VCDP+ RR+V +PPIP
Sbjct: 93 SFLPPPARAWLLRDHRDGRFLLDRALA-------GGSTAFTDVAVCDPLFRRYVLLPPIP 145
Query: 152 DDLTAGVRR----------IAVEHFDYLLAPAGRDGSS----FRVV----CRPKLPKQCD 193
DDL A V+ + + LA G D F V+ CR KL
Sbjct: 146 DDLAASVQNPYLQCGGDGGLQSRSSEIFLASCGSDAGGEEPLFAVIWMACCRGKL----- 200
Query: 194 VTVFVFSSGAAFWRA-------AVLDACAATEKLFLPQSVHGYVYWRTHSSGTLLMLDTR 246
F FSS + WRA A+ +L HG YW + L+LDTR
Sbjct: 201 -VAFFFSSESQQWRALSPPEHYALSTRRVMGVRLGQRNHAHGCFYWMITLTHRWLVLDTR 259
Query: 247 DMDFFFVNIQ----------TNKCVIGEAEEVGRLAVFNTIVDVGVHKVEILSKAIRGGA 296
M+F V+I +N+ + E+ + + V + V K +
Sbjct: 260 RMEFLVVDISPVLSGRAMMFSNQIITLESMDGWTIVVVADVFRSDKRCVLYFYKFMYFSD 319
Query: 297 DEPWRHDRTIPLLPGYKWRAARMA-EGYLLLHGIVGNNSWSTPGIQ-LQHFTLDLKTLKL 354
+ +P GY++R A E YL + + P Q +F D+KT++L
Sbjct: 320 RWQLQSKINLPEEWGYRFRGIIGASECYLFIKLDHPKQNLGDPVQQNAMYFMFDIKTMQL 379
Query: 355 ESLCDSISRGRHHHPQFDLYRSFPPPLSLSSI 386
+ I G LY FPP SL S+
Sbjct: 380 GRFSE-ICSGTVSEAY--LYTGFPPSQSLPSV 408
>Os02g0199600 Cyclin-like F-box domain containing protein
Length = 434
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 130/333 (39%), Gaps = 58/333 (17%)
Query: 95 PDHAAGWRLRDVRHGXXXXXXXXXXXXXXXXGDRGFFPDVVVCDPMRRRHVRVPPIPDDL 154
P GW +RD R G D FP++ VCDP+ RR+V +PPIP +L
Sbjct: 119 PRRGLGWIVRDHRDGRFLLDRVASL-------DDNVFPELAVCDPLSRRYVVLPPIPREL 171
Query: 155 TAGVRRI-----AVEHFDYLLAPA-------GRDGSSFRVVCRPKLPKQCDVTVFVFSSG 202
A V R + LAP +F V+ + P++ V F F+S
Sbjct: 172 AAAVDRPLGVIGGRRRCEPFLAPCDADADADAESEPAFAVIWTARCPRK--VVAFAFASR 229
Query: 203 AAFWRAAVLDACAATEKLFLPQS------------VHGYVYWRTHSSGTLLMLDTRDMDF 250
WRA C + P HG YW + L+LDTR M+
Sbjct: 230 DGRWRALPSPECFVWSRHRSPFGCPVHAVWNRRFYAHGCFYWLDCLTHRWLVLDTRAMEI 289
Query: 251 FFVNIQTNKCVIGE-----AEEVGRLAVF-NTIVDVGVHKVEILSKAIRGGADEPWRHDR 304
I + C E E G++ VF + G + GG WR +R
Sbjct: 290 TVKQIPSPACYWEEHVAVVEGEDGKVGVFAHDFYRAGGEACLYYYTIVDGGDGPRWRLER 349
Query: 305 TIPL-LPG-----YKWRAARMAEGYLLLHGIVGNNSWSTP--GIQLQHFTLDLKTLKLES 356
T+PL P Y RAA A G L+L G ++ T ++ + +D+K+ +LE
Sbjct: 350 TVPLPWPAAHGRPYSIRAA--ANGSLILEVSHGTPAFMTSYRSRDVELYRIDVKSFELEM 407
Query: 357 LCDSISRGRHHHPQFDL---YRSFPPPLSLSSI 386
+C R D+ Y FPP LSL ++
Sbjct: 408 IC------RARCAAGDIAWAYFGFPPLLSLPTV 434
>Os07g0554900 Cyclin-like F-box domain containing protein
Length = 428
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 105/418 (25%), Positives = 153/418 (36%), Gaps = 54/418 (12%)
Query: 8 TILPEELVVEXXXXXXXXXXXXXXXSACKPLRRLITSXXXXXXXXXXXXXXXXXXXXXER 67
IL ++L+ E S+C P RR+IT R
Sbjct: 18 VILTDDLLEEIFIRLDTPADLARASSSCPPFRRVITDPSFLRRYRALYPPPLLGIL--PR 75
Query: 68 DRCGFLPXXXXXXXXXXXXS-DFAFSFLPDHAAGWRLRDVRHGXXXXXXXXXXXXXXXXG 126
D FLP + D + +FLPD WR RDVR G G
Sbjct: 76 DADAFLPAEPPHRSAPAAGAVDLSCAFLPDRHT-WRRRDVRDGRILFSREEEYYAPDDDG 134
Query: 127 DRGFFPDVVVCDPMRRRHVRVPPIPDDLT--AGVRRIAVEHFDYLLAPAGR--------D 176
D+ VCDP R+ + IP DL + + F+ LAPA
Sbjct: 135 ADVLLMDLAVCDPFSGRYAILTEIPQDLIDPLDLEGQSFLCFEPFLAPATAADDDEDEVG 194
Query: 177 GSSFRVVCRPKLPKQCDVTVFVFSSGAAFWRAAVLDACAA--------TEKLFLPQSVHG 228
G+SFRV+ + + F+F A WRA D AA ++F VHG
Sbjct: 195 GASFRVMYMAR--GLTKLMAFIFPWEAGEWRAVEYDGWAALINGTSTWLAEMFWRFHVHG 252
Query: 229 YVYWRTHSSGTLLMLDTRDMDFFFVNI---QTNKCVIGEAEEVGRLAVFNTIVDVGVHKV 285
+ W + LL+LDT + + K ++ E G+L +F I + +
Sbjct: 253 NICWLLDWANKLLILDTTTNQLSTIEMVPGSWKKDIVFLETEEGQLGLFVLINN--FYTS 310
Query: 286 EILSKAIRGGADEPWRHDRTIPL--LPGYKWRAARMA--EGYLLLHGIV--GNNSWSTPG 339
L AI D+ + R I LP W + GY+LL GI +SW
Sbjct: 311 FDLYYAIWQDNDKGVKQWRVIEAIQLPLNYWYENLLGIDGGYVLLQGIPKGSKSSWQASS 370
Query: 340 IQL-------------QH--FTLDLKTLKLESLCDSISRGRHHHPQFDLYRSFPPPLS 382
Q +H F++++KT ++E C + H +L+ S+PP LS
Sbjct: 371 RQNGSSQASESSSEVPEHVCFSVEVKTFRVERFCGT----NHAIKTANLFTSYPPSLS 424
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.141 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,313,451
Number of extensions: 482633
Number of successful extensions: 1284
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1261
Number of HSP's successfully gapped: 10
Length of query: 386
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 283
Effective length of database: 11,657,759
Effective search space: 3299145797
Effective search space used: 3299145797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)