Os02g0199600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os02g0199600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.97 | 0.396 | 13 | 1.11 | 1.07 | 0.784 | -0.904 | 0.92 | -0.524 | 15.8 | 29.79 | 1448 | -- | -- |
| 71.1 | 0.393 | 13 | 1.31 | 1.07 | 0.862 | -0.899 | -- | -0.491 | 15.8 | 29.8 | 1430 | -- | -- |
| 73.36 | 0.399 | 13 | 1.11 | 1.07 | 0.779 | -- | 0.846 | -0.524 | 15.9 | 29.8 | 1447 | -- | -- |
| 73.45 | 0.399 | 13 | 1.3 | 1.07 | 0.878 | -- | -- | -0.5 | 15.9 | 29.8 | 1447 | -- | -- |
| 132.22 | 0.536 | 13 | 1.04 | -- | 0.902 | -- | 1.03 | -0.502 | -- | 29.5 | 1274 | -- | -- |
| 110.42 | 0.493 | 13 | 1.02 | 1.15 | -- | -0.713 | -- | -0.428 | 15.7 | -- | -- | -- | -- |
| 111.93 | 0.495 | 13 | 1.01 | 1.15 | -- | -- | -- | -0.432 | 15.7 | -- | -- | -- | -- |
| 132.52 | 0.536 | 13 | 1.26 | -- | 0.994 | -- | -- | -0.47 | -- | 29.51 | 1274 | -- | -- |
| 115.39 | 0.5 | 13.1 | -- | 1.03 | 0.751 | -- | -- | -0.713 | 15.8 | 30.7 | 2870 | -- | -- |
| 184.62 | 0.635 | 13 | 0.962 | -- | -- | -- | -- | -0.462 | -- | -- | -- | -- | -- |
| 138.82 | 0.551 | 13 | -- | 1.13 | -- | -- | -- | -0.544 | 15.8 | -- | -- | -- | -- |
| 175.65 | 0.617 | 13 | -- | -- | 0.912 | -- | -- | -0.427 | -- | 29.4 | 1250 | -- | -- |
| 209.05 | 0.675 | 13 | -- | -- | -- | -- | -- | -0.569 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.03 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 2 | 66.21 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 8 | 66.46 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 10 | 66.51 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 11 | 66.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 14 | 66.55 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 16 | 66.55 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 11 |
| 25 | 66.59 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 81 | 67.06 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 83 | 67.15 | temperature | 30 | 14400 | < th | dose independent | sin | 12 | NA |
| 85 | 67.19 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 143 | 67.65 | temperature | 30 | 14400 | > th | dose dependent | rect. | 13 | 20 |
| 147 | 67.67 | temperature | 30 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 201 | 67.79 | temperature | 30 | 14400 | > th | dose dependent | sin | 14 | NA |
| 298 | 68.03 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 302 | 68.03 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 400 | 68.03 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 506 | 68.12 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 512 | 68.15 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 515 | 68.15 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 524 | 68.15 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 16 |
| 525 | 68.15 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 16 |
| 658 | 68.23 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 659 | 68.23 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 11 |
| 745 | 68.23 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 926 | 68.61 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 985 | 69.04 | humidity | 80 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 987 | 69.06 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 2 |