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Os10g0135400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.18 (0.0162) R2 : 0.553
β1 : 1.25 (0.0593) R2dD : 0.452 R2D : 0.266
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.511 (0.0346) R2dN8 : 0.287 R2N8 : 0.102
σ : 0.304
deviance : 42.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.48 0.232 9.13 1.56 0.156 -0.745 0.487 1.63 0.636 2.93 24.18 48 -- --
25.59 0.237 9.16 1.33 0.18 -0.611 0.235 -- 0.572 3.26 24.18 48 -- --
25.07 0.233 9.14 1.52 0.141 -0.765 -- 1.3 0.622 2.07 24.21 63 -- --
25.61 0.236 9.16 1.34 0.171 -0.624 -- -- 0.571 2.33 24.2 55 -- --
25.95 0.237 9.13 1.56 -- -0.871 -- 1.44 0.648 -- 24.2 60 -- --
31.32 0.262 9.18 1.24 0.424 -- 0.41 -- 0.502 3.01 -- -- -- --
31.87 0.264 9.18 1.23 0.425 -- -- -- 0.5 2.94 -- -- -- --
26.74 0.241 9.16 1.36 -- -0.768 -- -- 0.597 -- 24.2 56 -- --
70.35 0.393 9.21 -- 0.341 -0.306 -- -- 0.373 3 25.8 109 -- --
42.28 0.304 9.18 1.25 -- -- -- -- 0.511 -- -- -- -- --
71.83 0.396 9.21 -- 0.45 -- -- -- 0.363 2.95 -- -- -- --
74.53 0.403 9.2 -- -- -0.602 -- -- 0.409 -- 24.9 82 -- --
83.46 0.426 9.21 -- -- -- -- -- 0.372 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.02 temperature 20.0 720 > th dose dependent sin 7 NA
2 24.08 temperature 20.0 720 > th dose dependent rect. 4 5
14 24.22 temperature 20.0 720 > th dose dependent rect. 6 3
34 24.45 temperature 25.0 30 > th dose dependent rect. 23 23
36 24.46 temperature 25.0 30 > th dose dependent rect. 21 23
37 24.47 temperature 25.0 30 > th dose dependent rect. 1 21
39 24.49 temperature 25.0 30 > th dose dependent rect. 3 19
42 24.52 temperature 25.0 30 > th dose dependent rect. 6 16
47 24.54 temperature 25.0 30 > th dose dependent rect. 19 23
50 24.55 temperature 25.0 30 > th dose dependent rect. 6 23
54 24.57 temperature 25.0 30 > th dose dependent no NA NA
100 24.64 temperature 25.0 30 > th dose dependent rect. 7 13
261 24.86 temperature 25.0 90 > th dose dependent rect. 15 23
286 24.98 humidity 80.0 14400 > th dose independent rect. 17 1
299 25.05 temperature 20.0 270 > th dose dependent sin 1 NA
310 25.09 humidity 90.0 43200 < th dose independent rect. 19 3
316 25.12 humidity 80.0 43200 > th dose dependent rect. 17 6
326 25.15 wind 9.0 43200 > th dose dependent rect. 19 2
333 25.18 humidity 80.0 43200 > th dose dependent rect. 18 4
358 25.25 radiation 1.0 14400 > th dose independent rect. 18 12
360 25.26 wind 9.0 43200 > th dose independent rect. 19 2
364 25.27 humidity 90.0 43200 > th dose independent rect. 19 3
380 25.29 precipitation 0.1 43200 < th dose independent rect. 17 1
381 25.29 humidity 80.0 14400 < th dose independent rect. 16 2
384 25.29 precipitation 0.1 43200 < th dose dependent rect. 17 1
390 25.30 precipitation 0.1 43200 > th dose independent rect. 17 1
398 25.31 humidity 80.0 43200 > th dose dependent rect. 19 2
408 25.32 humidity 80.0 14400 > th dose independent rect. 14 5
422 25.34 temperature 25.0 90 > th dose dependent rect. 11 23
443 25.38 radiation 1.0 14400 > th dose independent rect. 18 1
464 25.39 temperature 25.0 90 > th dose dependent rect. 13 23
470 25.41 wind 9.0 43200 < th dose independent rect. 19 2
496 25.45 humidity 80.0 14400 < th dose independent rect. 14 5
535 25.46 temperature 25.0 10 > th dose dependent rect. 13 23
546 25.47 humidity 80.0 43200 > th dose dependent rect. 4 20
553 25.48 humidity 90.0 43200 < th dose independent rect. 13 12
554 25.48 radiation 1.0 14400 < th dose independent rect. 18 12
556 25.48 precipitation 0.1 43200 > th dose dependent rect. 17 1
558 25.48 wind 9.0 43200 > th dose dependent rect. 19 6
571 25.49 atmosphere 1000.0 43200 < th dose dependent rect. 22 1
572 25.49 temperature 25.0 1440 > th dose dependent rect. 17 2
573 25.49 radiation 1.0 43200 < th dose dependent rect. 20 7
585 25.50 radiation 1.0 14400 > th dose independent rect. 5 1
591 25.50 atmosphere 1000.0 43200 < th dose dependent rect. 20 3
608 25.51 atmosphere 1000.0 43200 < th dose dependent rect. 20 1
621 25.52 humidity 90.0 43200 < th dose independent sin 17 NA
625 25.52 humidity 90.0 43200 < th dose independent rect. 5 22
627 25.52 atmosphere 995.0 43200 < th dose dependent rect. 14 2
632 25.52 wind 9.0 43200 > th dose dependent rect. 19 8
639 25.53 radiation 1.0 14400 < th dose independent rect. 5 1
657 25.54 atmosphere 1000.0 43200 > th dose independent rect. 20 1
683 25.55 atmosphere 995.0 43200 > th dose independent rect. 12 1
686 25.55 radiation 1.0 43200 < th dose dependent rect. 24 3
700 25.56 atmosphere 1000.0 43200 < th dose independent rect. 20 1
713 25.56 temperature 20.0 1440 > th dose dependent rect. 17 12
724 25.57 atmosphere 995.0 43200 < th dose independent rect. 13 2
728 25.57 humidity 90.0 43200 < th dose independent rect. 1 22
763 25.59 temperature 25.0 1440 > th dose independent rect. 17 5
767 25.59 humidity 90.0 43200 < th dose independent rect. 11 23
768 25.59 humidity 90.0 43200 < th dose independent rect. 15 23
770 25.59 radiation 1.0 43200 < th dose dependent rect. 20 5
784 25.60 humidity 90.0 43200 < th dose independent no NA NA
785 25.60 atmosphere 1000.0 43200 > th dose independent rect. 1 1
787 25.60 atmosphere 1000.0 43200 < th dose independent rect. 1 1
793 25.60 atmosphere 1000.0 43200 > th dose independent rect. 20 6
803 25.60 radiation 1.0 43200 < th dose dependent rect. 22 5
822 25.61 atmosphere 1000.0 43200 < th dose independent rect. 20 7
830 25.61 humidity 90.0 43200 < th dose independent rect. 13 23
831 25.61 humidity 80.0 43200 > th dose dependent sin 18 NA
844 25.62 temperature 25.0 1440 > th dose independent rect. 19 1
893 25.63 humidity 90.0 43200 < th dose independent rect. 9 23
898 25.63 humidity 90.0 43200 < th dose independent rect. 22 23
921 25.64 radiation 1.0 14400 < th dose independent rect. 18 2
924 25.64 radiation 1.0 14400 < th dose independent rect. 18 4
932 25.64 humidity 90.0 43200 > th dose independent rect. 12 13
939 25.64 humidity 90.0 43200 > th dose independent rect. 5 22
960 25.65 precipitation 0.1 43200 > th dose independent rect. 19 1
964 25.65 temperature 25.0 1440 < th dose independent rect. 17 5
978 25.65 precipitation 0.1 43200 > th dose dependent rect. 19 1