Os07g0554500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os07g0554500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.77 | 0.351 | 8.72 | 1.85 | 0.947 | -0.751 | 0.00235 | 1.51 | 0.768 | 4.4 | 19.35 | 725 | -- | -- |
| 61.13 | 0.364 | 8.76 | 1.59 | 0.994 | -0.876 | 0.114 | -- | 0.705 | 4.29 | 19.3 | 769 | -- | -- |
| 55.77 | 0.348 | 8.72 | 1.85 | 0.947 | -0.751 | -- | 1.51 | 0.768 | 4.4 | 19.35 | 724 | -- | -- |
| 60.63 | 0.363 | 8.76 | 1.67 | 0.965 | -1.02 | -- | -- | 0.724 | 4.28 | 19.4 | 785 | -- | -- |
| 101.32 | 0.469 | 8.73 | 1.87 | -- | -0.82 | -- | 1.43 | 0.776 | -- | 19.4 | 559 | -- | -- |
| 80.69 | 0.421 | 8.79 | 1.31 | 0.964 | -- | -0.0692 | -- | 0.56 | 4.81 | -- | -- | -- | -- |
| 80.7 | 0.421 | 8.79 | 1.31 | 0.963 | -- | -- | -- | 0.56 | 4.8 | -- | -- | -- | -- |
| 105.02 | 0.477 | 8.77 | 1.71 | -- | -1.08 | -- | -- | 0.76 | -- | 19.4 | 428 | -- | -- |
| 124 | 0.519 | 8.81 | -- | 1 | -0.337 | -- | -- | 0.519 | 4.54 | 19.4 | 768 | -- | -- |
| 129.74 | 0.532 | 8.8 | 1.35 | -- | -- | -- | -- | 0.585 | -- | -- | -- | -- | -- |
| 126.2 | 0.526 | 8.83 | -- | 0.987 | -- | -- | -- | 0.414 | 4.76 | -- | -- | -- | -- |
| 155.19 | 0.58 | 8.78 | -- | -- | -0.564 | -- | -- | 0.645 | -- | 26.33 | 154 | -- | -- |
| 177.81 | 0.622 | 8.84 | -- | -- | -- | -- | -- | 0.436 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.51 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 14 |
| 4 | 51.68 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 12 | 51.88 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 24 | 52.10 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 19 |
| 31 | 52.28 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 134 | 54.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 167 | 54.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 15 |
| 169 | 54.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 201 | 54.86 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 245 | 55.31 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 312 | 55.84 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 371 | 56.21 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 394 | 56.36 | temperature | 20 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 486 | 56.91 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 490 | 56.93 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 541 | 57.23 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 557 | 57.29 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 23 |
| 588 | 57.47 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 598 | 57.53 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 631 | 57.67 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 706 | 58.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 718 | 58.08 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 758 | 58.23 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 762 | 58.24 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 800 | 58.36 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 13 |
| 825 | 58.45 | temperature | 15 | 270 | > th | dose dependent | sin | 5 | NA |
| 848 | 58.51 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 857 | 58.53 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 863 | 58.57 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 2 |
| 907 | 58.70 | humidity | 90 | 14400 | > th | dose independent | sin | 10 | NA |
| 921 | 58.74 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 922 | 58.74 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 943 | 58.80 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 6 |