BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0444700 Os09g0444700|AK120833
(377 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0444700 Mitochondrial substrate carrier family protein 565 e-161
Os03g0175200 Mitochondrial substrate carrier family protein 311 3e-85
Os10g0397800 Mitochondrial carrier protein family protein 286 1e-77
Os03g0754800 Mitochondrial substrate carrier family protein 222 4e-58
Os01g0329400 Mitochondrial substrate carrier family protein 202 3e-52
Os02g0233500 95 1e-19
>Os09g0444700 Mitochondrial substrate carrier family protein
Length = 377
Score = 565 bits (1456), Expect = e-161, Method: Compositional matrix adjust.
Identities = 298/377 (79%), Positives = 298/377 (79%)
Query: 1 AGHGGEAIDRRXXXXXXXXXXXXXVDGSPQPQPQAELRLRLPAEIDWDRLDKWRFFVLGA 60
AGHGGEAIDRR VDGSPQPQPQAELRLRLPAEIDWDRLDKWRFFVLGA
Sbjct: 1 AGHGGEAIDRREAPPPPKEAAAEKVDGSPQPQPQAELRLRLPAEIDWDRLDKWRFFVLGA 60
Query: 61 GLFSAVSTALYPAVVLKTRLQVXXXXXXXXXXXXXXXXXXXXXXILRSEGPLAFYRGFAT 120
GLFSAVSTALYPAVVLKTRLQV ILRSEGPLAFYRGFAT
Sbjct: 61 GLFSAVSTALYPAVVLKTRLQVAPSPAHAAASSLPPSAAAAATAILRSEGPLAFYRGFAT 120
Query: 121 SLAGTVPARALYMGALEATRSAVGPTALXXXXXXXXXXXXXXXXXXXXXXXXXQVVWTPV 180
SLAGTVPARALYMGALEATRSAVGPTAL QVVWTPV
Sbjct: 121 SLAGTVPARALYMGALEATRSAVGPTALALGAPEPVASAAAGAAAGLAAAVAAQVVWTPV 180
Query: 181 DVISQRLMVQGNPCPASRYRGGLDAFRKIVAADGLRGLYRGFGMSILTYAPSNAVWWATY 240
DVISQRLMVQGNPCPASRYRGGLDAFRKIVAADGLRGLYRGFGMSILTYAPSNAVWWATY
Sbjct: 181 DVISQRLMVQGNPCPASRYRGGLDAFRKIVAADGLRGLYRGFGMSILTYAPSNAVWWATY 240
Query: 241 SLSQKTIWSGIGCYLCEYGVGVQEIDAGEGDSSLQPGYKTXXXXXXXXXXXXXXXXXXXT 300
SLSQKTIWSGIGCYLCEYGVGVQEIDAGEGDSSLQPGYKT T
Sbjct: 241 SLSQKTIWSGIGCYLCEYGVGVQEIDAGEGDSSLQPGYKTVMVVQGVSAAMAGGASALVT 300
Query: 301 MPLDTIKTRMQVMDGEGGEPITVGRTVRRLIKEGGWGACYRGLGPRWASMSLSATTMITT 360
MPLDTIKTRMQVMDGEGGEPITVGRTVRRLIKEGGWGACYRGLGPRWASMSLSATTMITT
Sbjct: 301 MPLDTIKTRMQVMDGEGGEPITVGRTVRRLIKEGGWGACYRGLGPRWASMSLSATTMITT 360
Query: 361 YEFLKRLSAKGHESSLP 377
YEFLKRLSAKGHESSLP
Sbjct: 361 YEFLKRLSAKGHESSLP 377
>Os03g0175200 Mitochondrial substrate carrier family protein
Length = 330
Score = 311 bits (798), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 176/333 (52%), Positives = 203/333 (60%), Gaps = 32/333 (9%)
Query: 40 RLPAEIDWDRLDKWRFFVLGAGLFSAVSTALYPAVVLKTRLQVXXXXXXXXXXXXXXXXX 99
RLPAE++W+ LDK RFFVLGA LFS VS ALYPAVV+KT LQV
Sbjct: 23 RLPAEVNWEMLDKSRFFVLGAALFSGVSAALYPAVVVKTHLQVAPPPQAATATAAA---- 78
Query: 100 XXXXXILRSEGPLAFYRGFATSLAGTVPARALYMGALEATRSAVGPTALXXXXXXXXXXX 159
ILR +G FYRGF SLAGTVPARALYM ALEAT+S+VG A+
Sbjct: 79 -----ILRRDGLRGFYRGFGASLAGTVPARALYMAALEATKSSVGSAAVRLGVSEPAATA 133
Query: 160 XXXXXXXXXXXXXXQVVWTPVDVISQRLMVQGNPCPASRYRGGLDAFRKIVAADGLRGLY 219
QVVWTPVDVISQRLMVQ + RYRGG+DAF+KI+ ADG+RGLY
Sbjct: 134 AASAAGGVSAAIAAQVVWTPVDVISQRLMVQTSST--CRYRGGVDAFKKILLADGVRGLY 191
Query: 220 RGFGMSILTYAPSNAVWWATYSLSQKTIWSGIGCYLCEYGVGVQEIDAGEGDSSLQPGYK 279
RGFG+SI+TYAPSNAVWWA+Y+++Q+ IW +G E Y
Sbjct: 192 RGFGLSIVTYAPSNAVWWASYAMAQRFIWRVVGAERSE-------------------SYP 232
Query: 280 TXXXXXXXXXXXXXXXXXXXTMPLDTIKTRMQVM--DGEGGEPITVGRTVRRLIKEGGWG 337
+ TMPLDT+KTR+QVM DG T+ TVR L+KEGGW
Sbjct: 233 SLMAVQGASAALAGGASALVTMPLDTVKTRIQVMETDGAAAARPTLKSTVRGLLKEGGWA 292
Query: 338 ACYRGLGPRWASMSLSATTMITTYEFLKRLSAK 370
ACYRGLGPRW SMSLSA TM+TTYEFLKRLSAK
Sbjct: 293 ACYRGLGPRWGSMSLSAATMVTTYEFLKRLSAK 325
>Os10g0397800 Mitochondrial carrier protein family protein
Length = 330
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 167/330 (50%), Positives = 194/330 (58%), Gaps = 31/330 (9%)
Query: 41 LPAEIDWDRLDKWRFFVLGAGLFSAVSTALYPAVVLKTRLQVXXXXXXXXXXXXXXXXXX 100
+PAE+ W+ LDK RFF+LGA LFS VS ALYPAVVLKT LQV
Sbjct: 28 MPAEVSWEMLDKSRFFLLGAALFSGVSAALYPAVVLKTHLQVSPPPAAAASTTAAA---- 83
Query: 101 XXXXILRSEGPLAFYRGFATSLAGTVPARALYMGALEATRSAVGPTALXXXXXXXXXXXX 160
ILR GP FYRGF SLAGTVPARA+YM ALEAT+SAVG A+
Sbjct: 84 ----ILRRHGPRGFYRGFGASLAGTVPARAVYMAALEATKSAVGSAAVRLGVAEPAASAA 139
Query: 161 XXXXXXXXXXXXXQVVWTPVDVISQRLMVQGNPCPASRYRGGLDAFRKIVAADGLRGLYR 220
QVVWTPVDV+SQRLMVQ YRGG DA R+I+ ADG+RGLYR
Sbjct: 140 ASAAGGVSAAVAAQVVWTPVDVVSQRLMVQ-TAAAGPPYRGGADALRRILRADGVRGLYR 198
Query: 221 GFGMSILTYAPSNAVWWATYSLSQKTIWSGIGCYLCEYGVGVQEIDAGEGDSSLQPGYKT 280
GFG+S+LTYAPS+A WWA+Y+ +Q+ IW +G DS +
Sbjct: 199 GFGVSVLTYAPSSAAWWASYATAQRLIWRALG--------------PAHHDSR-----AS 239
Query: 281 XXXXXXXXXXXXXXXXXXXTMPLDTIKTRMQVMDGEGGEPITVGRTVRRLIKEGGWGACY 340
TMPLDT+KTR+QVMDG G ++ R L++EGGWGACY
Sbjct: 240 VVAVQGASAAAAGGAAALVTMPLDTVKTRLQVMDGGGA---SLASEARALVREGGWGACY 296
Query: 341 RGLGPRWASMSLSATTMITTYEFLKRLSAK 370
RGLGPRWASMSLSA TM+T YEFLKRLS K
Sbjct: 297 RGLGPRWASMSLSAATMVTAYEFLKRLSTK 326
>Os03g0754800 Mitochondrial substrate carrier family protein
Length = 321
Score = 222 bits (565), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 131/335 (39%), Positives = 172/335 (51%), Gaps = 26/335 (7%)
Query: 39 LRLPAEIDWDRLDKWRFFVLGAGLFSAVSTALYPAVVLKTRLQVXXXXXXXXXXXXXXXX 98
L EI+WD LDK + +V+GAG+FS V+ ALYP V+KTR+QV
Sbjct: 12 LHHQTEINWDNLDKTKLYVVGAGMFSGVTVALYPVSVIKTRMQVATGEAVRRNAAATFRN 71
Query: 99 XXXXXXILRSEGPLAFYRGFATSLAGTVPARALYMGALEATRSAVGPTALXXXXXXXXXX 158
IL+ +G YRGF T + G +PAR +++ ALE T++A
Sbjct: 72 ------ILKVDGVPGLYRGFGTVITGAIPARIIFLTALETTKAASLKLVEPFKLSEPVQA 125
Query: 159 XXXXXXXXXXXXXXXQVVWTPVDVISQRLMVQGNPCPASRYRGGLDAFRKIVAADGLRGL 218
Q V+ P+DV+SQ+LMVQG RY+GGLD ++I+ ADG+RGL
Sbjct: 126 AFANGLGGLSASLCSQAVFVPIDVVSQKLMVQGYSGHV-RYKGGLDVAQQIIKADGIRGL 184
Query: 219 YRGFGMSILTYAPSNAVWWATYSLSQKTIWSGIGCYLCEYGVGVQEIDAGEGDSSLQPGY 278
YRGFG+S++TY+PS+AVWWA+Y SQ+ IWS + D P
Sbjct: 185 YRGFGLSVMTYSPSSAVWWASYGSSQRIIWSAFDRW---------------NDKESSPSQ 229
Query: 279 KTXXXXXXXXXXXXXXXXXXXTMPLDTIKTRMQVMDGEGGEPITVGRTVRRLIKEGGWGA 338
T T P+DTIKTR+QV +P + VRRLI E GW
Sbjct: 230 LTIVGVQATGGIIAGAVTSCVTTPIDTIKTRLQV---NQNKPKAM-EVVRRLIAEDGWKG 285
Query: 339 CYRGLGPRWASMSLSATTMITTYEFLKRLSAKGHE 373
YRGLGPR+ S S T+MI YE+LKRL AK E
Sbjct: 286 FYRGLGPRFFSSSAWGTSMIVCYEYLKRLCAKVEE 320
>Os01g0329400 Mitochondrial substrate carrier family protein
Length = 329
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 164/328 (50%), Gaps = 22/328 (6%)
Query: 43 AEIDWDRLDKWRFFVLGAGLFSAVSTALYPAVVLKTRLQVXXXXXXXXXXXXXXXXXXXX 102
A I+W RLDK RF V+GA LF+A L+P V+KTR+QV
Sbjct: 22 ANINWQRLDKTRFHVIGAILFTAQQGVLHPTAVVKTRMQVAEGGLSHMSGFSVFRR---- 77
Query: 103 XXILRSEGPLAFYRGFATSLAGTVPARALYMGALEATRSAVGPTALXXXXXXXXXXXXXX 162
ILRS+G +RGF TS G +P R + +LE ++ +
Sbjct: 78 --ILRSDGIPGAFRGFGTSAVGALPGRVFALTSLEVSKEMAFKYSEHFDMSEASRIAVAN 135
Query: 163 XXXXXXXXXXXQVVWTPVDVISQRLMVQGNPCPASRYRGGLDAFRKIVAADGLRGLYRGF 222
+ P+DVI QRLM QG P A+ YRG D K+V +GLRGLYRGF
Sbjct: 136 GIAGLVSSIFSSAYFVPLDVICQRLMAQGLPGMAT-YRGPFDVISKVVRTEGLRGLYRGF 194
Query: 223 GMSILTYAPSNAVWWATYSLSQKTIWSGIGCYLCEYGVGVQEIDAGEGDSSLQPGYKTXX 282
G+++LT +P++A+WW++Y +Q IW +G YG+ DS +P
Sbjct: 195 GITMLTQSPASALWWSSYGGAQHAIWRSLG-----YGI----------DSQKKPSQSELV 239
Query: 283 XXXXXXXXXXXXXXXXXTMPLDTIKTRMQVMDGEGGEPITVGRTVRRLIKEGGWGACYRG 342
T P+DTIKTR+QVMD G +V +T R L++E GW YRG
Sbjct: 240 VVQATAGTIAGACSSIITTPIDTIKTRLQVMDNYGRGRPSVMKTTRVLLEEDGWRGFYRG 299
Query: 343 LGPRWASMSLSATTMITTYEFLKRLSAK 370
GPR+ +MSL T+MI TYE +KRLS K
Sbjct: 300 FGPRFLNMSLWGTSMIVTYELIKRLSVK 327
>Os02g0233500
Length = 55
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/54 (83%), Positives = 46/54 (85%), Gaps = 3/54 (5%)
Query: 183 ISQRLMVQGNPCPASRYRGGLDAFRKIVAADGLRGLYRGFGMSILTYAPSNAVW 236
+ Q LMVQGNPCPAS YRGGLD FRKIVAAD GLYRGFGMSILTYAPSN VW
Sbjct: 5 VVQSLMVQGNPCPASHYRGGLDVFRKIVAAD---GLYRGFGMSILTYAPSNVVW 55
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,681,534
Number of extensions: 380474
Number of successful extensions: 1261
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1231
Number of HSP's successfully gapped: 7
Length of query: 377
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 274
Effective length of database: 11,657,759
Effective search space: 3194225966
Effective search space used: 3194225966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)