Os01g0329400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochondrial substrate carrier family protein.
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Os01g0329400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochondrial substrate carrier family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.4 | 0.33 | 11.3 | 0.282 | 1.98 | -0.803 | -0.477 | 0.868 | 0.0927 | 5.5 | 22.3 | 1042 | -- | -- |
| 51.95 | 0.336 | 11.3 | 0.0302 | 2.02 | -0.816 | -0.32 | -- | 0.0673 | 5.52 | 22.2 | 1070 | -- | -- |
| 49.91 | 0.329 | 11.3 | 0.286 | 1.96 | -0.791 | -- | 0.92 | 0.0934 | 5.47 | 22.25 | 967 | -- | -- |
| 52.09 | 0.336 | 11.3 | -0.00951 | 1.99 | -0.808 | -- | -- | 0.0214 | 5.52 | 22.25 | 1076 | -- | -- |
| 128.32 | 0.528 | 11.2 | 0.714 | -- | -1.63 | -- | 2.1 | 0.363 | -- | 26.6 | 376 | -- | -- |
| 78.37 | 0.415 | 11.4 | -0.277 | 1.98 | -- | -0.559 | -- | -0.249 | 5.76 | -- | -- | -- | -- |
| 79.13 | 0.417 | 11.4 | -0.281 | 1.98 | -- | -- | -- | -0.247 | 5.74 | -- | -- | -- | -- |
| 130.67 | 0.532 | 11.3 | 0.169 | -- | -1.48 | -- | -- | 0.251 | -- | 25.9 | 360 | -- | -- |
| 52.07 | 0.336 | 11.3 | -- | 1.99 | -0.813 | -- | -- | 0.0276 | 5.5 | 22.2 | 1070 | -- | -- |
| 281.52 | 0.784 | 11.4 | -0.22 | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
| 81.21 | 0.422 | 11.4 | -- | 1.97 | -- | -- | -- | -0.216 | 5.75 | -- | -- | -- | -- |
| 131.26 | 0.534 | 11.3 | -- | -- | -1.44 | -- | -- | 0.233 | -- | 26.3 | 371 | -- | -- |
| 282.79 | 0.785 | 11.4 | -- | -- | -- | -- | -- | -0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 5 | 47.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 22 | 48.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 23 | 48.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 36 | 49.02 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 41 | 49.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 13 |
| 55 | 49.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 56 | 49.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 63 | 49.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 64 | 49.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 65 | 49.80 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 67 | 49.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 21 |
| 68 | 49.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 82 | 49.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 86 | 49.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 124 | 50.28 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 132 | 50.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 133 | 50.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 138 | 50.42 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 21 |
| 139 | 50.44 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 163 | 50.59 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 183 | 50.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 232 | 51.01 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 234 | 51.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 245 | 51.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 270 | 51.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 295 | 51.38 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 314 | 51.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 384 | 51.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 426 | 52.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 472 | 52.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 475 | 52.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 493 | 52.42 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 513 | 52.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 544 | 52.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 647 | 52.82 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 648 | 52.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 15 |
| 662 | 52.85 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 665 | 52.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 698 | 52.90 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 783 | 53.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 819 | 53.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 949 | 53.26 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 950 | 53.27 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 951 | 53.27 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |