BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0439200 Os09g0439200|AK108738
(232 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0439200 ZIM domain containing protein 377 e-105
Os07g0615200 ZIM domain containing protein 104 5e-23
Os03g0402800 ZIM domain containing protein 94 6e-20
Os03g0180900 ZIM domain containing protein 86 2e-17
Os03g0181100 ZIM domain containing protein 69 2e-12
Os10g0392400 ZIM domain containing protein 68 4e-12
>Os09g0439200 ZIM domain containing protein
Length = 232
Score = 377 bits (967), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/232 (82%), Positives = 191/232 (82%)
Query: 1 MAGRXXXXXXXXGKDRSSFAVTCSLLSQFLKEKKXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MAGR GKDRSSFAVTCSLLSQFLKEKK
Sbjct: 1 MAGRATATATAAGKDRSSFAVTCSLLSQFLKEKKGGGGGLQGLGLGLRPAPAAPPAAGAG 60
Query: 61 XXXXXXXTTMNLLSGLDAPAVEVEPNTAETAADELPLIKAPADQQSDESASEAAGEKAQQ 120
TTMNLLSGLDAPAVEVEPNTAETAADELPLIKAPADQQSDESASEAAGEKAQQ
Sbjct: 61 GAFRPPPTTMNLLSGLDAPAVEVEPNTAETAADELPLIKAPADQQSDESASEAAGEKAQQ 120
Query: 121 LTIFYGGKVVVFENFPSTKVKDLLQIVSTGDGVDKNTGTAATQSLPRPAHNSLPDLPIAR 180
LTIFYGGKVVVFENFPSTKVKDLLQIVSTGDGVDKNTGTAATQSLPRPAHNSLPDLPIAR
Sbjct: 121 LTIFYGGKVVVFENFPSTKVKDLLQIVSTGDGVDKNTGTAATQSLPRPAHNSLPDLPIAR 180
Query: 181 RNSLHRFLEKRKGRMNANAPYQANCTAAPSKQANGDKSWLGFGQEMTIKQEI 232
RNSLHRFLEKRKGRMNANAPYQANCTAAPSKQANGDKSWLGFGQEMTIKQEI
Sbjct: 181 RNSLHRFLEKRKGRMNANAPYQANCTAAPSKQANGDKSWLGFGQEMTIKQEI 232
>Os07g0615200 ZIM domain containing protein
Length = 244
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 111/250 (44%), Gaps = 56/250 (22%)
Query: 13 GKDRSSFAVTCSLLSQFLKEKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTMNL 72
G+ +SFA+ CSLLS+++++ TM+L
Sbjct: 12 GERATSFAMACSLLSRYVRQN------------GAAAAELGLGIRGEGEAPRAAPATMSL 59
Query: 73 LSGLDAPAVEVEPNTAETAADELPLIKAPAD--QQSDESASEAAGEKAQ-----QLTIFY 125
L P AE + + L A QQ +A AA + Q QLTIFY
Sbjct: 60 L-----------PGEAERKKETMELFPQSAGFGQQDAITADSAADAREQEPEKRQLTIFY 108
Query: 126 GGKVVVFENFPSTKVKDLLQIVSTGDG-------------VDKNTGT-----AATQSLP- 166
GGKV+VF +FP+ K K L+Q+ S G V NT A SLP
Sbjct: 109 GGKVLVFNDFPADKAKGLMQLASKGSPVAPQNAAAPAPAAVTDNTKAPMAVPAPVSSLPT 168
Query: 167 ------RPAHNSLPDLPIARRNSLHRFLEKRKGRMNANAPYQANCT-AAPSKQANGDKSW 219
+PA + D+PIAR+ SLHRFLEKRK R+NA PYQA+ + A P K+ + W
Sbjct: 169 AQADAQKPARANASDMPIARKASLHRFLEKRKDRLNAKTPYQASPSDATPVKKEPESQPW 228
Query: 220 LGFGQEMTIK 229
LG G +K
Sbjct: 229 LGLGPNAVVK 238
>Os03g0402800 ZIM domain containing protein
Length = 228
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 33/149 (22%)
Query: 116 EKAQQLTIFYGGKVVVFENFPSTKVKDLLQIVSTGDGVDKN--------TGTAATQS--- 164
++ +QLTIFYGGKV+VF++FP+ K KDL+Q+ S +N T T A +
Sbjct: 77 QEKRQLTIFYGGKVLVFDDFPAEKAKDLMQMASKSSSTAQNCVLLPSSATATVADNTKVS 136
Query: 165 ---------------LPRPAHNSLPDLPIARRNSLHRFLEKRKGRMNANAPYQANCT-AA 208
P+P + DLP AR+ SLHRFLEKRK R+ A APYQ + + A+
Sbjct: 137 AVPAPASALPVAQANAPKPVRPNAADLPQARKASLHRFLEKRKDRLQAKAPYQGSPSDAS 196
Query: 209 P-SKQANGDKSWLGFGQE-----MTIKQE 231
P K+ + WLG G + ++++QE
Sbjct: 197 PVKKELQESQPWLGLGPQVAAPDLSLRQE 225
>Os03g0180900 ZIM domain containing protein
Length = 209
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 95/209 (45%), Gaps = 35/209 (16%)
Query: 17 SSFAVTCSLLSQFLKEKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTMNLLSGL 76
S FAVTC LL Q++KE T M+L++G
Sbjct: 23 SRFAVTCGLLRQYMKEH---------------------SGSNGGGGFLPAVTAMSLMTG- 60
Query: 77 DAPAVEVEPNTAETAADELPLIKAPADQQSDESASEAAGEKAQQLTIFYGGKVVVFENFP 136
A A E P +T + L A D + EKAQ LTIFYGG VVVF++FP
Sbjct: 61 GADAEEEAPEVRKT----MELFPQQAGTLKDTQERKEITEKAQ-LTIFYGGSVVVFDDFP 115
Query: 137 STKVKDLLQIVSTGDGVDKNTGTAATQSLPRPAHNSLPDLPIARRNSLHRFLEKRKGRMN 196
+ K +L+++ + D + A + +P LPD+PIAR+ SL RFLEKRK R+
Sbjct: 116 AEKAGELMKLAGSRDSTAAAAVSDAGAAAGQPC---LPDMPIARKVSLQRFLEKRKNRIV 172
Query: 197 ANAPY--QANCTAAPSKQA---NGDKSWL 220
P A SK+A +G SWL
Sbjct: 173 VAEPLPESEKKEAESSKRAKKDDGGASWL 201
>Os03g0181100 ZIM domain containing protein
Length = 187
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 16/84 (19%)
Query: 121 LTIFYGGKVVVFENFPSTKVKDLLQIVSTGDGVDKNTGTAATQSLPRPAHN---SLPDLP 177
LTIFYGG++VVFE+FP+ K +++++ S+G PA +L D+P
Sbjct: 75 LTIFYGGRMVVFEDFPADKAAEVMRMASSGMAAA-------------PAQREGAALADMP 121
Query: 178 IARRNSLHRFLEKRKGRMNANAPY 201
I R+ SL RF KRK R+ A PY
Sbjct: 122 IMRKASLQRFFAKRKDRLAATTPY 145
>Os10g0392400 ZIM domain containing protein
Length = 171
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 24/127 (18%)
Query: 106 SDESASEAAGEKAQQLTIFYGGKVVVFENFPSTKVKDLLQIVSTGDGVDKNTGTAATQSL 165
+D A+ +AG LTIFY G++VV ++ P K +L+++ G+A S
Sbjct: 59 ADGVATPSAGTA--PLTIFYDGRMVVVDDVPVEKAAELMRL----------AGSAC--SP 104
Query: 166 PRPAHNS-LPDLPIARRNSLHRFLEKRKGRMNANA-PYQANCTAAPSKQ--------ANG 215
P+PAH + LP++PIAR+ SL RFL+KRK R+ + PY+ A+P+ + +
Sbjct: 105 PQPAHAAALPEMPIARKASLQRFLQKRKHRITTTSEPYKKAAVASPAPEKSFAVAPVKDE 164
Query: 216 DKSWLGF 222
+WLG
Sbjct: 165 PATWLGL 171
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.126 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,339,559
Number of extensions: 240711
Number of successful extensions: 707
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 7
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 154 (63.9 bits)