BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0420300 Os09g0420300|AK120582
(411 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0420300 DNA glycosylase family protein 637 0.0
Os06g0649800 DNA glycosylase family protein 257 9e-69
Os03g0198900 DNA glycosylase family protein 234 6e-62
Os08g0489300 DNA glycosylase family protein 214 1e-55
Os01g0799500 DNA glycosylase family protein 191 9e-49
>Os09g0420300 DNA glycosylase family protein
Length = 411
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/377 (83%), Positives = 316/377 (83%)
Query: 35 VRDKDATTMMRRRLYQQQHPPSSSGAREPGVPSMLLRRAAXXXXXXPRSLNVSCASEASN 94
VRDKDATTMMRRRLYQQQHPPSSSGAREPGVPSMLLRRAA PRSLNVSCASEASN
Sbjct: 35 VRDKDATTMMRRRLYQQQHPPSSSGAREPGVPSMLLRRAAGGGGGGPRSLNVSCASEASN 94
Query: 95 DSFCSRASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLI 154
DSFCSRAST LI
Sbjct: 95 DSFCSRASTGRIGRRPVGPPGVGAAHALRRAAGSAGPPAARPVARKAAASVAPDVAASLI 154
Query: 155 AVANGEAAPALTGPPRCPWVTPNTDPCYAAFHDHEWGVPVHDDKKLFEMLVLSGALAEMT 214
AVANGEAAPALTGPPRCPWVTPNTDPCYAAFHDHEWGVPVHDDKKLFEMLVLSGALAEMT
Sbjct: 155 AVANGEAAPALTGPPRCPWVTPNTDPCYAAFHDHEWGVPVHDDKKLFEMLVLSGALAEMT 214
Query: 215 WPAILSKRETFKEVFMDFDPLLVAKLSERKILGPCSPARSLLSEHRLRIIIENAQEVLKV 274
WPAILSKRETFKEVFMDFDPLLVAKLSERKILGPCSPARSLLSEHRLRIIIENAQEVLKV
Sbjct: 215 WPAILSKRETFKEVFMDFDPLLVAKLSERKILGPCSPARSLLSEHRLRIIIENAQEVLKV 274
Query: 275 IEEFGSFDNYCWGFLNSKPMVGRFRHPREVPMKTPKADAMSQDLLRRGFLGVGPTVIYAF 334
IEEFGSFDNYCWGFLNSKPMVGRFRHPREVPMKTPKADAMSQDLLRRGFLGVGPTVIYAF
Sbjct: 275 IEEFGSFDNYCWGFLNSKPMVGRFRHPREVPMKTPKADAMSQDLLRRGFLGVGPTVIYAF 334
Query: 335 MQAVGMANDHLVTCYRFGECCSCSSSTEXXXXXXMDGADNHSKSMVKDQEVNMICGLVEC 394
MQAVGMANDHLVTCYRFGECCSCSSSTE MDGADNHSKSMVKDQEVNMICGLVEC
Sbjct: 335 MQAVGMANDHLVTCYRFGECCSCSSSTEAPAAAAMDGADNHSKSMVKDQEVNMICGLVEC 394
Query: 395 VSLEPSRARATTVLSIS 411
VSLEPSRARATTVLSIS
Sbjct: 395 VSLEPSRARATTVLSIS 411
>Os06g0649800 DNA glycosylase family protein
Length = 407
Score = 257 bits (657), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 113/206 (54%), Positives = 153/206 (74%), Gaps = 24/206 (11%)
Query: 162 APAL--TGPPRCPWVTPNTDPCYAAFHDHEWGVPVHDDKKLFEMLVLSGALAEMTWPAIL 219
APA G RC WVTP +DPCY FHD EWGVPVHDD++LFE+LVLSGALAE+TWP IL
Sbjct: 184 APATPEAGKRRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWPEIL 243
Query: 220 SKRETFKEVFMDFDPLLVAKLSERKILGPCSPARSLLSEHRLRIIIENAQEVLKVIEEFG 279
+R+ F+E+F+DFDP+ ++K++E+K++ P S A SLLSE +LR ++ENA+++LK+++EFG
Sbjct: 244 KRRQLFREIFVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVDEFG 303
Query: 280 SFDNYCWGFLNSKPMVGRFRHPREVPMKTPKADAMSQDLLRRGFLGVGPTVIYAFMQAVG 339
SFD YCWGFLN KP+V +FR+PR+VP+K+PKAD +S+D+ A G
Sbjct: 304 SFDRYCWGFLNHKPIVSKFRYPRQVPVKSPKADMISKDM------------------AAG 345
Query: 340 MANDHLVTCYRFGECCS----CSSST 361
+ NDHLV+C+RF EC C+S T
Sbjct: 346 LTNDHLVSCFRFKECNEAPTLCTSDT 371
>Os03g0198900 DNA glycosylase family protein
Length = 417
Score = 234 bits (598), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 103/189 (54%), Positives = 142/189 (75%), Gaps = 1/189 (0%)
Query: 167 GPPRCPWVTPNTDPCYAAFHDHEWGVPVHDDKKLFEMLVLSGALAEMTWPAILSKRETFK 226
G RC W+T N++P Y AFHD EWGVPVHDD+KLFE+L LS ALAE+TWP IL+KR+ F+
Sbjct: 196 GKTRCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFR 255
Query: 227 EVFMDFDPLLVAKLSERKI-LGPCSPARSLLSEHRLRIIIENAQEVLKVIEEFGSFDNYC 285
E+F F+ V++ +++KI L S LLSE ++R ++ NA+++ KVI++FGSF NYC
Sbjct: 256 EMFDGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSNYC 315
Query: 286 WGFLNSKPMVGRFRHPREVPMKTPKADAMSQDLLRRGFLGVGPTVIYAFMQAVGMANDHL 345
W F+ KP+ FR+ R+VP+KTPK++A+S+ L+RRGF VGPT IY+FMQ G+ NDHL
Sbjct: 316 WSFVKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVNDHL 375
Query: 346 VTCYRFGEC 354
C+RF +C
Sbjct: 376 SCCFRFQDC 384
>Os08g0489300 DNA glycosylase family protein
Length = 339
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 93/185 (50%), Positives = 128/185 (69%)
Query: 170 RCPWVTPNTDPCYAAFHDHEWGVPVHDDKKLFEMLVLSGALAEMTWPAILSKRETFKEVF 229
RC W+T N+D Y FHD WGVPV++D +LFE+L LSG L + W IL +R+ ++E F
Sbjct: 140 RCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGMLIDHNWTEILKRRDMYREAF 199
Query: 230 MDFDPLLVAKLSERKILGPCSPARSLLSEHRLRIIIENAQEVLKVIEEFGSFDNYCWGFL 289
DFDP VAK+ E + L+E R+R IIENA+ + KV +EFGSF Y WG +
Sbjct: 200 ADFDPSTVAKMDENDVAEISGNKELKLAECRVRCIIENAKCIQKVAKEFGSFSGYIWGHV 259
Query: 290 NSKPMVGRFRHPREVPMKTPKADAMSQDLLRRGFLGVGPTVIYAFMQAVGMANDHLVTCY 349
N +P VGR++H + +P +TPK++A+S+DL+RRGF VGP ++Y+FMQA G+ DHLV C+
Sbjct: 260 NHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVIVYSFMQASGIVIDHLVDCF 319
Query: 350 RFGEC 354
RF EC
Sbjct: 320 RFPEC 324
>Os01g0799500 DNA glycosylase family protein
Length = 391
Score = 191 bits (485), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 135/210 (64%), Gaps = 7/210 (3%)
Query: 155 AVANGEA---APALTG--PPRCPWVTPNTDPCYAAFHDHEWGVPVHDDKKLFEMLVLSGA 209
A A G A A A+TG RC ++TP +DP Y A+HD EWGVPV DD+ LFEML LSG
Sbjct: 184 ATATGAAELVAGAVTGHDEKRCSFITPYSDPLYVAYHDEEWGVPVRDDELLFEMLTLSGV 243
Query: 210 LAEMTWPAILSKRETFKEVFMDFDPLLVAKLSERKILGPCSPARSLLSEHRLRIIIENAQ 269
W +IL +R ++E F F+ VAK +E+++ A L +R + NA
Sbjct: 244 QVGADWTSILKRRHVYREAFSGFNVDAVAKYTEKQMASLS--AEFGLDLGTIRGAVNNAC 301
Query: 270 EVLKVIEEFGSFDNYCWGFLNSKPMVGRFRHPREVPMKTPKADAMSQDLLRRGFLGVGPT 329
+ +V +FGSF Y W F+N+KP+ +++ R++P+KT K++++S+D++RRGF VGPT
Sbjct: 302 RISEVRRDFGSFSKYVWAFVNNKPLSPSYKYSRKIPVKTSKSESISKDMVRRGFRFVGPT 361
Query: 330 VIYAFMQAVGMANDHLVTCYRFGECCSCSS 359
VI++FMQAVG+ NDHLV+C R C S S+
Sbjct: 362 VIHSFMQAVGLTNDHLVSCPRHRVCSSSSA 391
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,959,289
Number of extensions: 403777
Number of successful extensions: 981
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 978
Number of HSP's successfully gapped: 6
Length of query: 411
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 308
Effective length of database: 11,657,759
Effective search space: 3590589772
Effective search space used: 3590589772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)