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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0799500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA glycosylase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 1.5 (0.572) R2 : 0.229
β1 : 27.7 (5.29) R2dD : 10.5 R2D : -14.1
β2 : 1.19 (0.243) R2dC : 0.0425 R2C : -2.22
β3 : -23.5 (4.39) R2dE : 14 R2E : -17.8
β4 : -3.1 (0.95) R2dD*C : 0.0186 R2D*C : -2.28
β5 : 237 (41.8) R2dD*E : 25.7 R2D*E : -20.2
γ1 : -0.153 (0.213) R2dN8 : 0.00121 R2N8 : -2.33
σ : 1.85
deviance : 1550.15
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_____
C
peak time of C : 1.91
E
wheather : humidity
threshold : 49
memory length : 1419
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16
open length of G : 1.08

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1550.15 1.85 1.5 27.7 1.19 -23.5 -3.1 237 -0.153 1.91 49 1419 16 1.08
1734.22 1.95 4.73 -2 1.71 2.36 -1.9 -- -0.358 2.82 49 1419 16 1.08
1586.46 1.86 1.51 27.7 1.17 -23.6 -- 238 -0.139 1.85 49 1399 16 1.11
1666.07 1.9 4.63 -1.91 1.55 1.9 -- -- 0.108 2.93 59 2502 16.4 1.73
1669.94 1.9 1.49 27.8 -- -23.5 -- 239 -0.119 -- 49.03 1387 16 1.1
1742.76 1.96 4.74 -1.99 1.67 -- -1.96 -- -0.368 2.76 -- -- -- --
1755.72 1.96 4.73 -1.95 1.68 -- -- -- -0.357 2.94 -- -- -- --
1774.48 1.96 4.63 -1.94 -- 1.96 -- -- 0.119 -- 60 2481 16.4 1.98
1770.34 1.96 4.65 -- 1.5 1.88 -- -- 0.124 3.14 59.01 2477 16.4 1.57
1917.29 2.05 4.72 -1.87 -- -- -- -- -0.314 -- -- -- -- --
1855.43 2.01 4.68 -- 1.64 -- -- -- -0.14 2.93 -- -- -- --
1765.88 1.96 4.74 -- -- 1.64 -- -- -0.395 -- 88.8 923 17.1 2.69
2009.88 2.09 4.68 -- -- -- -- -- -0.106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1559.94 temperature 20 720 > th dose dependent rect. 17 5
3 1561.20 temperature 20 720 > th dose dependent rect. 17 2
5 1562.44 humidity 50 1440 < th dose independent rect. 16 1
6 1563.18 humidity 50 1440 < th dose dependent rect. 16 1
12 1565.78 temperature 25 720 > th dose dependent rect. 17 12
17 1567.80 temperature 30 720 > th dose dependent rect. 18 1
81 1577.70 radiation 1 720 > th dose dependent rect. 18 1
117 1584.63 humidity 90 90 > th dose dependent rect. 3 2
119 1584.81 humidity 90 90 > th dose independent rect. 3 2
120 1585.36 humidity 70 720 < th dose independent rect. 18 13
121 1585.41 humidity 70 720 < th dose independent rect. 18 2
135 1586.38 wind 3 90 < th dose dependent rect. 3 2
141 1588.72 humidity 70 720 > th dose independent rect. 16 10
163 1591.19 humidity 80 720 < th dose dependent rect. 18 3
169 1592.37 temperature 25 720 > th dose dependent sin 12 NA
181 1595.01 temperature 20 90 > th dose independent rect. 16 13
195 1595.77 humidity 70 720 < th dose dependent rect. 19 12
209 1596.51 wind 1 90 < th dose independent rect. 4 1
234 1599.23 humidity 70 4320 < th dose dependent rect. 18 2
237 1599.38 humidity 70 4320 < th dose dependent rect. 18 13
259 1601.46 wind 7 43200 > th dose dependent rect. 24 16
260 1601.54 wind 7 43200 > th dose dependent rect. 2 14
265 1601.88 humidity 70 14400 < th dose dependent rect. 17 15
270 1602.12 humidity 70 4320 < th dose independent rect. 18 13
271 1602.13 humidity 70 4320 < th dose independent rect. 18 2
273 1602.13 temperature 20 90 > th dose dependent rect. 16 13
306 1603.60 wind 9 43200 > th dose independent rect. 19 21
307 1603.61 radiation 1 720 > th dose independent rect. 18 11
344 1604.50 wind 9 43200 < th dose independent rect. 22 18
345 1604.51 wind 9 43200 < th dose independent rect. 3 11
348 1604.55 wind 9 43200 < th dose independent rect. 3 13
357 1604.82 wind 9 43200 > th dose independent rect. 22 18
358 1604.84 wind 9 43200 > th dose independent rect. 24 16
362 1605.02 wind 9 43200 < th dose independent rect. 18 22
365 1605.06 wind 7 43200 > th dose dependent sin 2 NA
375 1605.28 wind 9 43200 > th dose independent rect. 2 14
400 1606.01 wind 3 43200 > th dose dependent rect. 1 16
417 1606.54 wind 7 43200 > th dose dependent rect. 19 22
429 1606.83 humidity 50 1440 > th dose independent rect. 16 1
435 1606.95 temperature 25 720 > th dose independent rect. 17 6
452 1607.14 wind 1 10 < th dose independent rect. 4 5
484 1607.77 wind 9 43200 < th dose independent rect. 8 6
486 1607.80 temperature 25 720 > th dose independent rect. 17 3
488 1607.84 radiation 30 14400 < th dose independent rect. 16 11
499 1608.12 radiation 1 720 > th dose independent rect. 18 1
522 1608.45 wind 7 43200 > th dose dependent rect. 9 5
536 1608.76 wind 9 43200 > th dose independent rect. 9 5
542 1608.85 wind 1 10 < th dose independent rect. 4 2
622 1610.17 wind 3 43200 > th dose dependent sin 2 NA
623 1610.19 wind 7 43200 > th dose dependent rect. 2 23
633 1610.32 wind 7 43200 > th dose dependent no NA NA
643 1610.42 radiation 30 14400 < th dose independent rect. 16 4
645 1610.44 wind 7 43200 > th dose dependent rect. 7 23
657 1610.71 wind 7 43200 > th dose dependent rect. 11 23
674 1610.89 radiation 1 720 < th dose dependent rect. 18 8
677 1610.95 wind 9 43200 < th dose dependent rect. 12 1
683 1610.99 wind 9 43200 < th dose independent sin 3 NA
686 1611.02 temperature 30 720 < th dose dependent rect. 17 6
692 1611.09 wind 9 43200 < th dose dependent rect. 3 13
693 1611.11 wind 9 43200 < th dose dependent rect. 1 15
694 1611.13 wind 9 43200 < th dose independent rect. 12 22
697 1611.14 radiation 10 14400 > th dose independent rect. 5 1
738 1611.54 wind 1 43200 > th dose dependent rect. 12 1
745 1611.62 wind 7 43200 > th dose dependent rect. 15 23
750 1611.74 wind 9 43200 > th dose independent rect. 12 22
752 1611.77 wind 3 43200 > th dose independent rect. 2 13
754 1611.81 wind 1 43200 > th dose dependent rect. 10 4
759 1611.86 wind 9 43200 > th dose independent rect. 13 20
760 1611.86 wind 9 43200 < th dose dependent rect. 10 4
761 1611.87 wind 9 43200 < th dose dependent rect. 4 11
781 1612.09 temperature 30 720 < th dose independent rect. 18 8
789 1612.17 wind 9 43200 > th dose dependent rect. 12 20
797 1612.27 humidity 60 14400 < th dose independent rect. 16 4
829 1612.50 wind 9 43200 > th dose independent sin 2 NA
839 1612.57 temperature 20 90 > th dose dependent rect. 3 2
857 1612.69 humidity 60 14400 > th dose independent rect. 17 16
859 1612.72 wind 9 43200 < th dose independent rect. 22 22
862 1612.73 wind 9 43200 > th dose independent rect. 24 21
863 1612.74 wind 9 43200 < th dose independent rect. 3 17
864 1612.75 wind 9 43200 > th dose independent rect. 22 23
866 1612.76 humidity 60 14400 < th dose independent rect. 16 17
907 1613.02 wind 9 43200 > th dose independent rect. 2 19
956 1613.47 temperature 30 720 < th dose dependent rect. 15 8
965 1613.54 wind 9 43200 > th dose independent rect. 2 23
968 1613.59 wind 9 43200 < th dose independent rect. 3 21
969 1613.60 humidity 60 14400 > th dose independent rect. 17 1
992 1613.75 wind 9 43200 > th dose independent no NA NA