BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0799500 Os01g0799500|AK109346
(391 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0799500 DNA glycosylase family protein 690 0.0
Os03g0198900 DNA glycosylase family protein 207 1e-53
Os08g0489300 DNA glycosylase family protein 196 3e-50
Os09g0420300 DNA glycosylase family protein 193 2e-49
Os06g0649800 DNA glycosylase family protein 173 2e-43
>Os01g0799500 DNA glycosylase family protein
Length = 391
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/391 (87%), Positives = 343/391 (87%)
Query: 1 MCNSNVKSAGVAQIDGRPVLQPAGNRVAAPEAARPLKKSLQKSLSMPASLDNXXXXXXXX 60
MCNSNVKSAGVAQIDGRPVLQPAGNRVAAPEAARPLKKSLQKSLSMPASLDN
Sbjct: 1 MCNSNVKSAGVAQIDGRPVLQPAGNRVAAPEAARPLKKSLQKSLSMPASLDNAAAATTCA 60
Query: 61 XSPEKXXXXXXXXXXXXXXXXXXXXXXXXXKATRVSGXXXXXXXXXXXXXXMGGLDRSRK 120
SPEK KATRVSG MGGLDRSRK
Sbjct: 61 ASPEKSRAADFARAAAASLLPPPTPASVSAKATRVSGAKVAAARTAAAAAAMGGLDRSRK 120
Query: 121 PAKKGGAAVLPVVTFAGLEAYEPAGSIAAAQREHVAMAQAQRKMRIAHYGRTASFSRVEG 180
PAKKGGAAVLPVVTFAGLEAYEPAGSIAAAQREHVAMAQAQRKMRIAHYGRTASFSRVEG
Sbjct: 121 PAKKGGAAVLPVVTFAGLEAYEPAGSIAAAQREHVAMAQAQRKMRIAHYGRTASFSRVEG 180
Query: 181 KVSATATGAAELVAGAVTGHDEKRCSFITPYSDPLYVAYHDEEWGVPVRDDELLFEMLTL 240
KVSATATGAAELVAGAVTGHDEKRCSFITPYSDPLYVAYHDEEWGVPVRDDELLFEMLTL
Sbjct: 181 KVSATATGAAELVAGAVTGHDEKRCSFITPYSDPLYVAYHDEEWGVPVRDDELLFEMLTL 240
Query: 241 SGVQVGADWTSILKRRHVYREAFSGFNVDAVAKYTEKQMASLSAEFGLDLGTIRGAVNNA 300
SGVQVGADWTSILKRRHVYREAFSGFNVDAVAKYTEKQMASLSAEFGLDLGTIRGAVNNA
Sbjct: 241 SGVQVGADWTSILKRRHVYREAFSGFNVDAVAKYTEKQMASLSAEFGLDLGTIRGAVNNA 300
Query: 301 CRISEVRRDFGSFSKYVWAFVNNKPLSPSYKYSRKIPVKTSKSESISKDMVRRGFRFVGP 360
CRISEVRRDFGSFSKYVWAFVNNKPLSPSYKYSRKIPVKTSKSESISKDMVRRGFRFVGP
Sbjct: 301 CRISEVRRDFGSFSKYVWAFVNNKPLSPSYKYSRKIPVKTSKSESISKDMVRRGFRFVGP 360
Query: 361 TVIHSFMQAVGLTNDHLVSCPRHRVCSSSSA 391
TVIHSFMQAVGLTNDHLVSCPRHRVCSSSSA
Sbjct: 361 TVIHSFMQAVGLTNDHLVSCPRHRVCSSSSA 391
>Os03g0198900 DNA glycosylase family protein
Length = 417
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/186 (51%), Positives = 131/186 (70%), Gaps = 3/186 (1%)
Query: 204 RCSFITPYSDPLYVAYHDEEWGVPVRDDELLFEMLTLSGVQVGADWTSILKRRHVYREAF 263
RCS+IT S+PLYVA+HDEEWGVPV DD+ LFE+LTLS W IL +R +RE F
Sbjct: 199 RCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFREMF 258
Query: 264 SGFNVDAVAKYTEKQMASLSAEFG---LDLGTIRGAVNNACRISEVRRDFGSFSKYVWAF 320
GFN +V+++T+K++ LS G L IR V NA ++ +V +DFGSFS Y W+F
Sbjct: 259 DGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSNYCWSF 318
Query: 321 VNNKPLSPSYKYSRKIPVKTSKSESISKDMVRRGFRFVGPTVIHSFMQAVGLTNDHLVSC 380
V +KP+ +++Y+R++P+KT KSE+ISK ++RRGF+ VGPT I+SFMQ G+ NDHL C
Sbjct: 319 VKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVNDHLSCC 378
Query: 381 PRHRVC 386
R + C
Sbjct: 379 FRFQDC 384
>Os08g0489300 DNA glycosylase family protein
Length = 339
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 94/185 (50%), Positives = 124/185 (67%), Gaps = 2/185 (1%)
Query: 204 RCSFITPYSDPLYVAYHDEEWGVPVRDDELLFEMLTLSGVQVGADWTSILKRRHVYREAF 263
RCS+IT SD YV +HDE WGVPV +D LFE+L LSG+ + +WT ILKRR +YREAF
Sbjct: 140 RCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGMLIDHNWTEILKRRDMYREAF 199
Query: 264 SGFNVDAVAKYTEKQMASLSAEFGLDLGT--IRGAVNNACRISEVRRDFGSFSKYVWAFV 321
+ F+ VAK E +A +S L L +R + NA I +V ++FGSFS Y+W V
Sbjct: 200 ADFDPSTVAKMDENDVAEISGNKELKLAECRVRCIIENAKCIQKVAKEFGSFSGYIWGHV 259
Query: 322 NNKPLSPSYKYSRKIPVKTSKSESISKDMVRRGFRFVGPTVIHSFMQAVGLTNDHLVSCP 381
N++P YK+ + IP +T KSE++SKD+VRRGFR VGP +++SFMQA G+ DHLV C
Sbjct: 260 NHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVIVYSFMQASGIVIDHLVDCF 319
Query: 382 RHRVC 386
R C
Sbjct: 320 RFPEC 324
>Os09g0420300 DNA glycosylase family protein
Length = 411
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 137/216 (63%), Gaps = 7/216 (3%)
Query: 178 VEGKVSATATGAAELVAGAVTGHDEKRCSFITPYSDPLYVAYHDEEWGVPVRDDELLFEM 237
V + A A G A A A+TG RC ++TP +DP Y A+HD EWGVPV DD+ LFEM
Sbjct: 149 VAASLIAVANGEA---APALTG--PPRCPWVTPNTDPCYAAFHDHEWGVPVHDDKKLFEM 203
Query: 238 LTLSGVQVGADWTSILKRRHVYREAFSGFNVDAVAKYTEKQM--ASLSAEFGLDLGTIRG 295
L LSG W +IL +R ++E F F+ VAK +E+++ A L +R
Sbjct: 204 LVLSGALAEMTWPAILSKRETFKEVFMDFDPLLVAKLSERKILGPCSPARSLLSEHRLRI 263
Query: 296 AVNNACRISEVRRDFGSFSKYVWAFVNNKPLSPSYKYSRKIPVKTSKSESISKDMVRRGF 355
+ NA + +V +FGSF Y W F+N+KP+ +++ R++P+KT K++++S+D++RRGF
Sbjct: 264 IIENAQEVLKVIEEFGSFDNYCWGFLNSKPMVGRFRHPREVPMKTPKADAMSQDLLRRGF 323
Query: 356 RFVGPTVIHSFMQAVGLTNDHLVSCPRHRVCSSSSA 391
VGPTVI++FMQAVG+ NDHLV+C R C S S+
Sbjct: 324 LGVGPTVIYAFMQAVGMANDHLVTCYRFGECCSCSS 359
>Os06g0649800 DNA glycosylase family protein
Length = 407
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 120/200 (60%), Gaps = 20/200 (10%)
Query: 192 LVAGAVTGHDEKRCSFITPYSDPLYVAYHDEEWGVPVRDDELLFEMLTLSGVQVGADWTS 251
+VA A ++RC+++TP SDP YV +HDEEWGVPV DD LFE+L LSG W
Sbjct: 182 VVAPATPEAGKRRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWPE 241
Query: 252 ILKRRHVYREAFSGFNVDAVAKYTEKQMASLS--AEFGLDLGTIRGAVNNACRISEVRRD 309
ILKRR ++RE F F+ A++K EK++ + A L +R V NA +I ++ +
Sbjct: 242 ILKRRQLFREIFVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVDE 301
Query: 310 FGSFSKYVWAFVNNKPLSPSYKYSRKIPVKTSKSESISKDMVRRGFRFVGPTVIHSFMQA 369
FGSF +Y W F+N+KP+ ++Y R++PVK+ K++ ISKDM A
Sbjct: 302 FGSFDRYCWGFLNHKPIVSKFRYPRQVPVKSPKADMISKDM------------------A 343
Query: 370 VGLTNDHLVSCPRHRVCSSS 389
GLTNDHLVSC R + C+ +
Sbjct: 344 AGLTNDHLVSCFRFKECNEA 363
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.130 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,171,217
Number of extensions: 418467
Number of successful extensions: 1055
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1049
Number of HSP's successfully gapped: 5
Length of query: 391
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 288
Effective length of database: 11,657,759
Effective search space: 3357434592
Effective search space used: 3357434592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)