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Os08g0489300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA glycosylase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0443) R2 : 0.828
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -5.9 (0.128) R2dE : 0.804 R2E : 0.811
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.556 (0.0933) R2dN8 : 0.0176 R2N8 : 0.0239
σ : 0.832
deviance : 319.17
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_____
C
peak time of C : --
E
wheather : temperature
threshold : -69.95
memory length : 873
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.83
open length of G : 20.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
298.78 0.812 11.1 -0.732 4.84 -4.34 2.07 -1.91 -0.612 12.2 6.364 230 5.18 19.4
298.48 0.805 11.1 -0.679 4.76 -4.44 1.67 -- -0.616 12.1 2.408 234 4.9 19.9
313.63 0.825 11 -0.676 4.77 -4.25 -- -0.719 -0.576 12.1 4.993 222 5.15 19.7
310.98 0.821 11 -0.632 4.81 -4.59 -- -- -0.592 12.2 2.494 252 4.8 19.9
382.01 0.91 11.1 0.349 -- -6.48 -- -0.0263 -0.458 -- -17.95 858 5.79 18.2
483.06 1.03 11.1 -1.12 4.64 -- 2.37 -- -0.902 9.81 -- -- -- --
504.49 1.05 11.1 -1.03 4.62 -- -- -- -0.897 9.83 -- -- -- --
314.7 0.826 11.1 -0.34 -- -5.82 -- -- -0.653 -- -67.87 880 4.82 19.9
318.18 0.831 11 -- 4.79 -4.6 -- -- -0.497 12.3 2.667 261 4.56 20.1
1780.95 1.97 11.2 -1.07 -- -- -- -- -0.894 -- -- -- -- --
532.19 1.08 11 -- 4.62 -- -- -- -0.783 9.85 -- -- -- --
319.17 0.832 11.1 -- -- -5.9 -- -- -0.556 -- -69.95 873 4.83 20.1
1811.34 1.99 11.2 -- -- -- -- -- -0.775 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 310.67 temperature 10.0 270 > th dose dependent rect. 5 19
3 316.21 temperature 10.0 270 > th dose dependent rect. 16 8
5 322.37 temperature 10.0 10 > th dose dependent rect. 6 20
11 325.89 temperature 10.0 90 > th dose dependent rect. 5 22
35 343.75 precipitation 0.1 270 < th dose independent rect. 1 14
36 343.75 precipitation 0.1 270 < th dose dependent rect. 1 14
39 344.43 temperature 20.0 90 > th dose independent rect. 6 20
44 346.22 temperature 10.0 270 > th dose dependent rect. 5 5
46 346.83 temperature 15.0 270 > th dose independent rect. 15 10
48 347.56 atmosphere 995.0 270 > th dose independent rect. 1 14
49 348.34 radiation 40.0 270 < th dose independent rect. 15 10
52 348.75 wind 9.0 270 < th dose independent rect. 15 10
54 349.34 temperature 10.0 270 > th dose independent rect. 1 14
55 349.34 atmosphere 1015.0 270 < th dose independent rect. 1 14
62 351.52 precipitation 0.1 270 < th dose independent rect. 15 10
63 351.52 precipitation 0.1 270 < th dose dependent rect. 15 10
66 351.77 temperature 10.0 270 > th dose dependent rect. 17 17
67 352.28 temperature 20.0 10 > th dose independent rect. 6 20
69 352.89 radiation 1.0 270 < th dose dependent sin 9 NA
80 354.79 wind 9.0 270 < th dose independent rect. 1 14
88 356.27 wind 7.0 270 < th dose independent rect. 5 6
92 357.15 atmosphere 995.0 270 > th dose independent rect. 11 18
94 357.50 temperature 10.0 270 > th dose dependent rect. 16 19
100 357.88 temperature 20.0 90 > th dose independent rect. 17 9
103 358.19 wind 9.0 270 < th dose dependent rect. 5 6
107 358.47 temperature 15.0 270 > th dose independent rect. 5 6
141 361.03 atmosphere 995.0 270 > th dose independent rect. 5 6
142 361.03 atmosphere 1015.0 270 < th dose independent rect. 5 6
143 361.03 temperature 10.0 270 > th dose independent rect. 11 18
147 361.17 precipitation 0.1 270 < th dose independent rect. 5 6
148 361.17 precipitation 0.1 270 < th dose dependent rect. 5 6
153 361.21 radiation 1.0 270 < th dose independent sin 10 NA
154 361.33 humidity 50.0 270 > th dose independent rect. 5 5
165 362.10 radiation 1.0 270 > th dose independent sin 10 NA
172 363.53 wind 9.0 90 < th dose independent rect. 17 9
174 363.60 temperature 30.0 270 < th dose independent rect. 11 18
181 364.00 radiation 20.0 90 < th dose independent rect. 17 9
187 364.05 precipitation 0.1 270 < th dose independent rect. 11 18
188 364.05 precipitation 0.1 270 < th dose dependent rect. 11 18
200 364.99 radiation 1.0 270 > th dose independent rect. 17 17
203 365.30 wind 9.0 270 < th dose independent rect. 11 18
204 365.42 wind 1.0 270 > th dose independent rect. 15 9
217 366.05 precipitation 0.1 90 < th dose independent rect. 17 9
218 366.05 precipitation 0.1 90 < th dose dependent rect. 17 9
226 366.43 humidity 50.0 270 > th dose independent rect. 11 18
235 367.40 radiation 40.0 90 < th dose dependent rect. 17 9
249 367.83 wind 5.0 270 < th dose independent rect. 1 3
250 367.84 wind 7.0 90 < th dose independent rect. 5 22
255 368.87 temperature 20.0 10 > th dose independent rect. 18 8
263 368.98 wind 7.0 90 < th dose independent rect. 6 20
280 369.76 radiation 40.0 270 < th dose independent rect. 5 5
295 370.14 atmosphere 995.0 90 > th dose independent rect. 17 9
304 370.51 temperature 10.0 10 > th dose dependent rect. 6 7
324 371.06 humidity 50.0 90 > th dose independent rect. 17 9
353 372.05 precipitation 0.1 270 < th dose independent rect. 1 3
354 372.05 precipitation 0.1 270 < th dose dependent rect. 1 3
361 372.25 wind 9.0 270 < th dose dependent rect. 1 3
362 372.30 wind 5.0 90 < th dose independent rect. 3 2
367 372.76 wind 9.0 270 < th dose dependent rect. 6 3
374 372.97 temperature 30.0 270 < th dose independent rect. 5 4
377 373.06 atmosphere 995.0 270 > th dose dependent rect. 1 3
387 373.42 wind 7.0 90 < th dose dependent rect. 3 2
413 373.88 precipitation 0.1 90 < th dose independent rect. 3 2
414 373.88 precipitation 0.1 90 < th dose dependent rect. 3 2
435 374.47 wind 1.0 270 > th dose independent rect. 1 3
451 374.80 temperature 10.0 270 > th dose independent rect. 1 3
453 374.80 temperature 30.0 270 < th dose independent rect. 1 3
454 374.80 humidity 50.0 270 > th dose independent rect. 1 3
457 374.80 atmosphere 995.0 270 > th dose independent rect. 1 3
458 374.80 atmosphere 1010.0 270 < th dose independent rect. 1 3
460 374.80 radiation 1.0 270 < th dose independent rect. 1 3
466 374.80 radiation 1.0 270 < th dose dependent rect. 1 3
472 374.82 radiation 1.0 270 > th dose independent rect. 4 6
485 374.93 wind 5.0 270 < th dose independent rect. 24 5
500 375.51 wind 1.0 270 > th dose independent rect. 11 17
505 375.67 temperature 10.0 270 > th dose dependent rect. 7 1
523 376.14 temperature 10.0 90 > th dose independent rect. 3 2
525 376.14 temperature 30.0 90 < th dose independent rect. 3 2
526 376.14 humidity 50.0 90 > th dose independent rect. 3 2
529 376.14 atmosphere 995.0 90 > th dose independent rect. 3 2
530 376.14 atmosphere 1010.0 90 < th dose independent rect. 3 2
532 376.14 radiation 20.0 90 < th dose independent rect. 3 2
539 376.18 radiation 40.0 90 < th dose dependent rect. 3 2
545 376.23 temperature 10.0 90 > th dose independent rect. 13 17
548 376.28 radiation 1.0 90 < th dose independent rect. 3 2
566 376.37 wind 9.0 270 < th dose independent rect. 3 23
573 376.55 precipitation 0.1 270 < th dose independent rect. 23 6
574 376.55 precipitation 0.1 270 < th dose dependent rect. 23 6
575 376.56 temperature 10.0 90 > th dose dependent rect. 2 4
577 376.65 wind 5.0 10 < th dose independent rect. 2 4
583 376.79 wind 9.0 270 < th dose independent rect. 5 18
586 376.83 atmosphere 995.0 90 > th dose independent rect. 13 17
587 376.83 precipitation 0.1 270 < th dose independent rect. 4 21
588 376.83 precipitation 0.1 270 < th dose dependent rect. 4 21
592 376.96 atmosphere 995.0 90 > th dose dependent rect. 3 2
595 377.07 wind 7.0 10 < th dose independent rect. 6 7
623 377.86 wind 1.0 270 > th dose independent rect. 5 5
626 377.89 temperature 25.0 30 > th dose dependent sin 9 NA
649 378.27 precipitation 0.1 90 < th dose independent rect. 13 17
650 378.27 precipitation 0.1 90 < th dose dependent rect. 13 17
674 378.47 precipitation 0.1 10 < th dose independent rect. 6 20
675 378.47 precipitation 0.1 10 < th dose dependent rect. 6 20
689 378.73 precipitation 0.1 270 < th dose independent rect. 5 18
690 378.73 precipitation 0.1 270 < th dose dependent rect. 5 18
698 378.90 radiation 40.0 10 < th dose independent rect. 12 18
699 378.90 wind 9.0 270 < th dose dependent rect. 24 5
721 379.11 wind 9.0 90 < th dose independent rect. 13 17
729 379.23 radiation 1.0 270 < th dose dependent rect. 23 6
731 379.26 temperature 10.0 10 > th dose independent rect. 6 7
733 379.26 atmosphere 995.0 10 > th dose independent rect. 6 7
734 379.26 atmosphere 1015.0 10 < th dose independent rect. 6 7
735 379.26 temperature 10.0 10 > th dose independent rect. 13 17
738 379.27 atmosphere 995.0 270 > th dose dependent rect. 24 5
743 379.34 temperature 10.0 270 > th dose independent rect. 23 6
744 379.34 temperature 30.0 270 < th dose independent rect. 23 6
745 379.34 humidity 50.0 270 > th dose independent rect. 23 6
748 379.34 atmosphere 995.0 270 > th dose independent rect. 23 6
749 379.34 radiation 20.0 270 < th dose independent rect. 23 6
753 379.35 radiation 40.0 270 < th dose dependent rect. 23 6
759 379.41 wind 9.0 10 < th dose dependent rect. 2 4
760 379.42 radiation 1.0 270 < th dose independent rect. 23 6
765 379.54 precipitation 0.1 10 < th dose independent rect. 2 4
766 379.54 precipitation 0.1 10 < th dose dependent rect. 2 4
768 379.55 precipitation 0.1 10 < th dose independent rect. 6 7
770 379.55 precipitation 0.1 10 < th dose dependent rect. 6 7
773 379.64 temperature 10.0 90 > th dose dependent rect. 3 2
807 379.89 atmosphere 1015.0 270 < th dose independent rect. 10 19
808 379.90 atmosphere 1015.0 270 < th dose independent rect. 24 5
821 380.09 humidity 50.0 90 > th dose dependent rect. 3 2
828 380.16 temperature 15.0 10 > th dose dependent rect. 18 19
837 380.25 precipitation 0.1 10 < th dose independent rect. 17 9
838 380.25 precipitation 0.1 10 < th dose dependent rect. 17 9
841 380.27 humidity 50.0 270 > th dose independent rect. 1 14
881 380.52 atmosphere 995.0 10 > th dose independent rect. 13 17
905 380.65 radiation 10.0 10 < th dose independent rect. 2 4
906 380.65 wind 1.0 270 > th dose independent rect. 10 19
939 381.40 radiation 40.0 10 < th dose dependent rect. 2 4
942 381.43 temperature 10.0 10 > th dose independent rect. 2 4
944 381.43 temperature 30.0 10 < th dose independent rect. 2 4
945 381.43 humidity 50.0 10 > th dose independent rect. 2 4
948 381.43 atmosphere 995.0 10 > th dose independent rect. 2 4
949 381.43 atmosphere 1010.0 10 < th dose independent rect. 2 4