BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0489300 Os08g0489300|AK104597
(339 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G13635.1 | chr1:4674248-4675784 FORWARD LENGTH=312 285 2e-77
AT5G57970.1 | chr5:23467316-23468910 FORWARD LENGTH=348 226 1e-59
AT1G75090.1 | chr1:28187647-28189612 REVERSE LENGTH=330 224 6e-59
AT1G80850.1 | chr1:30385607-30387272 REVERSE LENGTH=328 206 2e-53
AT1G15970.1 | chr1:5486544-5488494 REVERSE LENGTH=353 205 3e-53
AT5G44680.1 | chr5:18024461-18025893 REVERSE LENGTH=354 202 2e-52
AT3G12710.1 | chr3:4040572-4041828 REVERSE LENGTH=313 199 2e-51
>AT1G13635.1 | chr1:4674248-4675784 FORWARD LENGTH=312
Length = 311
Score = 285 bits (730), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 193/293 (65%), Gaps = 19/293 (6%)
Query: 44 SKYMQRIYPLGIQRXXXXXXXXXXXXXXXX---XXXXXXXXXXXWEPKVPLLYGGTFSPW 100
+K+++RIYP+ +QR E K+ L G
Sbjct: 31 AKHLKRIYPITLQRSTSSSFSLSSISLSLSQNSTDSVSTDSNSTLEQKISLALG------ 84
Query: 101 GDVLVSLERRREEDDDKVSDHDVEGGEEDFDCS-EPGSLHRCSWITKNSDEAYVQFHDEC 159
L+S RRE K + +DF+ S EP RC+WITK SDE YV FHD+
Sbjct: 85 ---LISSPHRREIFVPKSIPQQLC---QDFNSSDEP---KRCNWITKKSDEVYVMFHDQQ 135
Query: 160 WGVPVYNDNRLFELLALSGMLIDHNWTEILKRRDMYREAFADFDPSTVAKMDENDVAEIS 219
WGVPVY+DN LFE LA+SGML+D+NWTEILKR++ +REAF +FDP+ VAKM E ++AEI+
Sbjct: 136 WGVPVYDDNLLFEFLAMSGMLMDYNWTEILKRKEHFREAFCEFDPNRVAKMGEKEIAEIA 195
Query: 220 GNKELKLAECRVRCIIENAKCIQKVAKEFGSFSGYIWGHVNHRPTVGRYKHHKYIPFRTP 279
NK + L E RVRCI++NAKCI KV EFGSFS ++WG ++++P + ++K+ + +P R+P
Sbjct: 196 SNKAIMLQESRVRCIVDNAKCITKVVNEFGSFSSFVWGFMDYKPIINKFKYSRNVPLRSP 255
Query: 280 KSEAVSKDLVRRGFRLVGPVIVYSFMQASGIVIDHLVDCFRFPECLHLADRSW 332
K+E +SKD+++RGFR VGPVIV+SFMQA+G+ IDHLVDCFR +C+ LA+R W
Sbjct: 256 KAEIISKDMIKRGFRFVGPVIVHSFMQAAGLTIDHLVDCFRHGDCVSLAERPW 308
>AT5G57970.1 | chr5:23467316-23468910 FORWARD LENGTH=348
Length = 347
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 96/186 (51%), Positives = 131/186 (70%)
Query: 140 RCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGMLIDHNWTEILKRRDMYREAF 199
RC+W+T NSD Y+ FHDE WGVPV++D RLFELL LSG L +H W IL +R +RE F
Sbjct: 155 RCTWVTPNSDPCYIVFHDEEWGVPVHDDKRLFELLVLSGALAEHTWPTILSKRQAFREVF 214
Query: 200 ADFDPSTVAKMDENDVAEISGNKELKLAECRVRCIIENAKCIQKVAKEFGSFSGYIWGHV 259
ADFDP+ + K++E + L++ ++R +IENA+ I KV +E+GSF YIW V
Sbjct: 215 ADFDPNAIVKINEKKIIGPGSPASTLLSDLKLRAVIENARQILKVIEEYGSFDKYIWSFV 274
Query: 260 NHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVIVYSFMQASGIVIDHLVDCF 319
++ V ++++ + +P +TPK+E +SKDLVRRGFR VGP +VYSFMQA+GI DHL CF
Sbjct: 275 KNKAIVSKFRYQRQVPAKTPKAEVISKDLVRRGFRSVGPTVVYSFMQAAGITNDHLTSCF 334
Query: 320 RFPECL 325
RF C+
Sbjct: 335 RFHHCI 340
>AT1G75090.1 | chr1:28187647-28189612 REVERSE LENGTH=330
Length = 329
Score = 224 bits (570), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 101/197 (51%), Positives = 136/197 (69%)
Query: 128 EDFDCSEPGSLHRCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGMLIDHNWTE 187
ED PG + RC WIT NSD YV FHDE WGVPV +D +LFELL S L + +W
Sbjct: 108 EDISPKIPGPVKRCHWITPNSDPIYVLFHDEEWGVPVRDDKKLFELLVFSQALAEFSWPS 167
Query: 188 ILKRRDMYREAFADFDPSTVAKMDENDVAEISGNKELKLAECRVRCIIENAKCIQKVAKE 247
IL+RRD +R+ F +FDPS +A+ E + + N L L+E ++R I+ENAK + KV +E
Sbjct: 168 ILRRRDDFRKLFEEFDPSAIAQFTEKRLMSLRVNGCLILSEQKLRAIVENAKSVLKVKQE 227
Query: 248 FGSFSGYIWGHVNHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVIVYSFMQA 307
FGSFS Y W VNH+P Y++ + +P ++PK+E +SKD+++RGFR VGP ++YSF+QA
Sbjct: 228 FGSFSNYCWRFVNHKPLRNGYRYGRQVPVKSPKAEYISKDMMQRGFRCVGPTVMYSFLQA 287
Query: 308 SGIVIDHLVDCFRFPEC 324
SGIV DHL CFR+ EC
Sbjct: 288 SGIVNDHLTACFRYQEC 304
>AT1G80850.1 | chr1:30385607-30387272 REVERSE LENGTH=328
Length = 327
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 136/214 (63%), Gaps = 12/214 (5%)
Query: 112 EEDDDKVSDHDVEGGEEDFDCSEPGSLHRCSWITKNSDEAYVQFHDECWGVPVYNDNRLF 171
EE D+K SD +G + RC+WIT SD+ Y+ FHDE WGVPV++D RLF
Sbjct: 119 EERDEKASDCFCDGRK------------RCAWITPKSDQCYIAFHDEEWGVPVHDDKRLF 166
Query: 172 ELLALSGMLIDHNWTEILKRRDMYREAFADFDPSTVAKMDENDVAEISGNKELKLAECRV 231
ELL+LSG L + +W +IL +R ++RE F DFDP ++++ + L+E ++
Sbjct: 167 ELLSLSGALAELSWKDILSKRQLFREVFMDFDPIAISELTNKKITSPEIAATTLLSEQKL 226
Query: 232 RCIIENAKCIQKVAKEFGSFSGYIWGHVNHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRR 291
R I+ENA + K+ FGSF YIW VN +PT ++++ + +P +T K+E +SKDLVRR
Sbjct: 227 RSILENANQVCKIIGAFGSFDKYIWNFVNQKPTQSQFRYPRQVPVKTSKAELISKDLVRR 286
Query: 292 GFRLVGPVIVYSFMQASGIVIDHLVDCFRFPECL 325
GFR V P ++YSFMQ +G+ DHL CFR +C+
Sbjct: 287 GFRSVSPTVIYSFMQTAGLTNDHLTCCFRHHDCM 320
>AT1G15970.1 | chr1:5486544-5488494 REVERSE LENGTH=353
Length = 352
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 90/194 (46%), Positives = 133/194 (68%), Gaps = 1/194 (0%)
Query: 131 DCSEPGSLHRCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGMLIDHNWTEILK 190
DC G RC+WIT +D YV FHDE WGVPV++D +LFELL LSG L + +WT+IL
Sbjct: 138 DCFADGR-KRCAWITPKADPCYVAFHDEEWGVPVHDDKKLFELLCLSGALAELSWTDILS 196
Query: 191 RRDMYREAFADFDPSTVAKMDENDVAEISGNKELKLAECRVRCIIENAKCIQKVAKEFGS 250
RR + RE F DFDP VA++++ + L+E ++R I++N++ ++K+ E GS
Sbjct: 197 RRHILREVFMDFDPVAVAELNDKKLTAPGTAAISLLSEVKIRSILDNSRHVRKIIAECGS 256
Query: 251 FSGYIWGHVNHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVIVYSFMQASGI 310
Y+W VN++PT ++++ + +P +T K+E +SKDLVRRGFR V P ++YSFMQA+G+
Sbjct: 257 LKKYMWNFVNNKPTQSQFRYQRQVPVKTSKAEFISKDLVRRGFRSVSPTVIYSFMQAAGL 316
Query: 311 VIDHLVDCFRFPEC 324
DHL+ CFR+ +C
Sbjct: 317 TNDHLIGCFRYQDC 330
>AT5G44680.1 | chr5:18024461-18025893 REVERSE LENGTH=354
Length = 353
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 144/223 (64%), Gaps = 7/223 (3%)
Query: 110 RREEDDDKVSDH----DVEGGEEDFDCSEPGSLHRCSWITKNSDEAYVQFHDECWGVPVY 165
++EE K+S + V+ E++ + E RCS+IT +SD YV +HD+ WGVPV+
Sbjct: 132 KQEERKKKISHYGRIKSVKSNEKNLNV-EHEKKKRCSFITTSSDPIYVAYHDKEWGVPVH 190
Query: 166 NDNRLFELLALSGMLIDHNWTEILKRRDMYREAFADFDPSTVAKMDENDVAEISGNKELK 225
+DN LFELL L+G + +WT +LKRR+ +REAF+ F+ VA +E + I + +
Sbjct: 191 DDNLLFELLVLTGAQVGSDWTSVLKRRNTFREAFSGFEAELVADFNEKKIQSIVNDYGIN 250
Query: 226 LAECRVRCIIENAKCIQKVAKEFGSFSGYIWGHVNHRPTVGRYKHHKYIPFRTPKSEAVS 285
L++ V +++NAK I KV ++ GSF+ YIWG + H+P +Y + IP +T KSE +S
Sbjct: 251 LSQ--VLAVVDNAKQILKVKRDLGSFNKYIWGFMKHKPVTTKYTSCQKIPVKTSKSETIS 308
Query: 286 KDLVRRGFRLVGPVIVYSFMQASGIVIDHLVDCFRFPECLHLA 328
KD+VRRGFR VGP +++S MQA+G+ DHL+ C R EC +A
Sbjct: 309 KDMVRRGFRFVGPTVIHSLMQAAGLTNDHLITCPRHLECTAMA 351
>AT3G12710.1 | chr3:4040572-4041828 REVERSE LENGTH=313
Length = 312
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 126/190 (66%), Gaps = 2/190 (1%)
Query: 139 HRCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGMLIDHNWTEILKRRDMYREA 198
RCS++T SD YV +HDE WGVPV++D LFELL LSG + +WT L++R YR+A
Sbjct: 122 QRCSFLTPTSDPIYVAYHDEEWGVPVHDDKTLFELLTLSGAQVGSDWTSTLRKRHDYRKA 181
Query: 199 FADFDPSTVAKMDENDVAEISGNKELKLAECRVRCIIENAKCIQKVAKEFGSFSGYIWGH 258
F +F+ VAK+ E ++ IS E K+ +VR ++ENAK I ++ K F S Y+WG
Sbjct: 182 FMEFEAEVVAKLTEKEMNAIS--IEYKIEMSKVRGVVENAKKIVEIKKAFVSLEKYLWGF 239
Query: 259 VNHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVIVYSFMQASGIVIDHLVDC 318
VNH+P YK IP +T KSE++SKD+VRRGFR VGP +V+SFMQA+G+ DHL+ C
Sbjct: 240 VNHKPISTNYKLGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLITC 299
Query: 319 FRFPECLHLA 328
R C LA
Sbjct: 300 CRHAPCTLLA 309
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,446,772
Number of extensions: 315764
Number of successful extensions: 1026
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1023
Number of HSP's successfully gapped: 7
Length of query: 339
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 240
Effective length of database: 8,392,385
Effective search space: 2014172400
Effective search space used: 2014172400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)