BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0489300 Os08g0489300|AK104597
(339 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0489300 DNA glycosylase family protein 644 0.0
Os09g0420300 DNA glycosylase family protein 214 5e-56
Os03g0198900 DNA glycosylase family protein 201 9e-52
Os01g0799500 DNA glycosylase family protein 196 2e-50
Os06g0649800 DNA glycosylase family protein 183 1e-46
>Os08g0489300 DNA glycosylase family protein
Length = 339
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/339 (92%), Positives = 312/339 (92%)
Query: 1 MLTTSSHSRHHHAFERSPNHSMMKNIADRNKHDLLQSAMNHAASKYMQRIYPLGIQRXXX 60
MLTTSSHSRHHHAFERSPNHSMMKNIADRNKHDLLQSAMNHAASKYMQRIYPLGIQR
Sbjct: 1 MLTTSSHSRHHHAFERSPNHSMMKNIADRNKHDLLQSAMNHAASKYMQRIYPLGIQRSSS 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXWEPKVPLLYGGTFSPWGDVLVSLERRREEDDDKVSD 120
WEPKVPLLYGGTFSPWGDVLVSLERRREEDDDKVSD
Sbjct: 61 NLTLSSLSLSQNSNDSSLSSSNSSWEPKVPLLYGGTFSPWGDVLVSLERRREEDDDKVSD 120
Query: 121 HDVEGGEEDFDCSEPGSLHRCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGML 180
HDVEGGEEDFDCSEPGSLHRCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGML
Sbjct: 121 HDVEGGEEDFDCSEPGSLHRCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGML 180
Query: 181 IDHNWTEILKRRDMYREAFADFDPSTVAKMDENDVAEISGNKELKLAECRVRCIIENAKC 240
IDHNWTEILKRRDMYREAFADFDPSTVAKMDENDVAEISGNKELKLAECRVRCIIENAKC
Sbjct: 181 IDHNWTEILKRRDMYREAFADFDPSTVAKMDENDVAEISGNKELKLAECRVRCIIENAKC 240
Query: 241 IQKVAKEFGSFSGYIWGHVNHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVI 300
IQKVAKEFGSFSGYIWGHVNHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVI
Sbjct: 241 IQKVAKEFGSFSGYIWGHVNHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVI 300
Query: 301 VYSFMQASGIVIDHLVDCFRFPECLHLADRSWGITNVAA 339
VYSFMQASGIVIDHLVDCFRFPECLHLADRSWGITNVAA
Sbjct: 301 VYSFMQASGIVIDHLVDCFRFPECLHLADRSWGITNVAA 339
>Os09g0420300 DNA glycosylase family protein
Length = 411
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 93/185 (50%), Positives = 128/185 (69%)
Query: 140 RCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGMLIDHNWTEILKRRDMYREAF 199
RC W+T N+D Y FHD WGVPV++D +LFE+L LSG L + W IL +R+ ++E F
Sbjct: 170 RCPWVTPNTDPCYAAFHDHEWGVPVHDDKKLFEMLVLSGALAEMTWPAILSKRETFKEVF 229
Query: 200 ADFDPSTVAKMDENDVAEISGNKELKLAECRVRCIIENAKCIQKVAKEFGSFSGYIWGHV 259
DFDP VAK+ E + L+E R+R IIENA+ + KV +EFGSF Y WG +
Sbjct: 230 MDFDPLLVAKLSERKILGPCSPARSLLSEHRLRIIIENAQEVLKVIEEFGSFDNYCWGFL 289
Query: 260 NHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVIVYSFMQASGIVIDHLVDCF 319
N +P VGR++H + +P +TPK++A+S+DL+RRGF VGP ++Y+FMQA G+ DHLV C+
Sbjct: 290 NSKPMVGRFRHPREVPMKTPKADAMSQDLLRRGFLGVGPTVIYAFMQAVGMANDHLVTCY 349
Query: 320 RFPEC 324
RF EC
Sbjct: 350 RFGEC 354
>Os03g0198900 DNA glycosylase family protein
Length = 417
Score = 201 bits (510), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 92/186 (49%), Positives = 128/186 (68%), Gaps = 1/186 (0%)
Query: 140 RCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGMLIDHNWTEILKRRDMYREAF 199
RCSWIT NS+ YV FHDE WGVPV++D +LFELL LS L + W IL +RD +RE F
Sbjct: 199 RCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFREMF 258
Query: 200 ADFDPSTVAKMDENDVAEIS-GNKELKLAECRVRCIIENAKCIQKVAKEFGSFSGYIWGH 258
F+ ++V++ + + +S N + L+E ++R ++ NAK + KV ++FGSFS Y W
Sbjct: 259 DGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSNYCWSF 318
Query: 259 VNHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVIVYSFMQASGIVIDHLVDC 318
V H+P +++ + +P +TPKSEA+SK L+RRGF+ VGP +YSFMQ SGIV DHL C
Sbjct: 319 VKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVNDHLSCC 378
Query: 319 FRFPEC 324
FRF +C
Sbjct: 379 FRFQDC 384
>Os01g0799500 DNA glycosylase family protein
Length = 391
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/185 (50%), Positives = 124/185 (67%), Gaps = 2/185 (1%)
Query: 140 RCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGMLIDHNWTEILKRRDMYREAF 199
RCS+IT SD YV +HDE WGVPV +D LFE+L LSG+ + +WT ILKRR +YREAF
Sbjct: 204 RCSFITPYSDPLYVAYHDEEWGVPVRDDELLFEMLTLSGVQVGADWTSILKRRHVYREAF 263
Query: 200 ADFDPSTVAKMDENDVAEISGNKELKLAECRVRCIIENAKCIQKVAKEFGSFSGYIWGHV 259
+ F+ VAK E +A +S L L +R + NA I +V ++FGSFS Y+W V
Sbjct: 264 SGFNVDAVAKYTEKQMASLSAEFGLDLGT--IRGAVNNACRISEVRRDFGSFSKYVWAFV 321
Query: 260 NHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVIVYSFMQASGIVIDHLVDCF 319
N++P YK+ + IP +T KSE++SKD+VRRGFR VGP +++SFMQA G+ DHLV C
Sbjct: 322 NNKPLSPSYKYSRKIPVKTSKSESISKDMVRRGFRFVGPTVIHSFMQAVGLTNDHLVSCP 381
Query: 320 RFPEC 324
R C
Sbjct: 382 RHRVC 386
>Os06g0649800 DNA glycosylase family protein
Length = 407
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 117/186 (62%), Gaps = 18/186 (9%)
Query: 139 HRCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGMLIDHNWTEILKRRDMYREA 198
RC+W+T SD YV FHDE WGVPV++D RLFELL LSG L + W EILKRR ++RE
Sbjct: 193 RRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWPEILKRRQLFREI 252
Query: 199 FADFDPSTVAKMDENDVAEISGNKELKLAECRVRCIIENAKCIQKVAKEFGSFSGYIWGH 258
F DFDP ++K++E + L+E ++R ++ENA+ I K+ EFGSF Y WG
Sbjct: 253 FVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVDEFGSFDRYCWGF 312
Query: 259 VNHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVIVYSFMQASGIVIDHLVDC 318
+NH+P V ++++ + +P ++PK++ +SKD+ A+G+ DHLV C
Sbjct: 313 LNHKPIVSKFRYPRQVPVKSPKADMISKDM------------------AAGLTNDHLVSC 354
Query: 319 FRFPEC 324
FRF EC
Sbjct: 355 FRFKEC 360
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,436,632
Number of extensions: 478035
Number of successful extensions: 1472
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1468
Number of HSP's successfully gapped: 5
Length of query: 339
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 237
Effective length of database: 11,709,973
Effective search space: 2775263601
Effective search space used: 2775263601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)