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Os09g0420300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA glycosylase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.49 (0.0352) R2 : 0.533
β1 : -1.79 (0.132) R2dD : 0.207 R2D : 0.107
β2 : 2.91 (0.186) R2dC : 1.04 R2C : 0.0127
β3 : 1.81 (0.206) R2dE : 0.337 R2E : -0.734
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.65 (0.51) R2dD*E : 0.059 R2D*E : 0.0205
γ1 : -0.39 (0.0763) R2dN8 : 0.0368 R2N8 : -0.0245
σ : 0.657
deviance : 198.93
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_____
C
peak time of C : 5.16
E
wheather : radiation
threshold : 0.53
memory length : 360
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 11.4
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
198.65 0.662 6.49 -1.77 2.78 1.74 0.935 -2.96 -0.381 5.27 0.4801 355 10.7 --
202.32 0.662 6.47 -1.61 2.84 1.73 2.87 -- -0.337 5.3 0.3578 360 11.1 --
198.93 0.657 6.49 -1.79 2.91 1.81 -- -3.65 -0.39 5.16 0.53 360 11.4 --
222.69 0.695 6.48 -1.6 2.9 1.71 -- -- -0.344 5.08 0.64 362 11.9 --
310.12 0.825 6.5 -1.45 -- -1.11 -- -1.64 -0.217 -- 0.53 360 11.4 --
233.93 0.717 6.48 -1.48 1.51 -- 2.43 -- -0.23 4.87 -- -- -- --
248.69 0.738 6.49 -1.49 1.52 -- -- -- -0.243 4.64 -- -- -- --
248.69 0.734 6.51 -1.49 -- -1.52 -- -- -0.243 -- -9.314 124 14.4 --
289.18 0.792 6.45 -- 3 1.8 -- -- -0.203 4.87 2.218 414 13.3 --
371.78 0.901 6.5 -1.44 -- -- -- -- -0.203 -- -- -- -- --
307.48 0.82 6.45 -- 1.49 -- -- -- -0.0767 4.66 -- -- -- --
307.48 0.817 6.47 -- -- -1.49 -- -- -0.0768 -- -14.87 164 14.7 --
426.12 0.964 6.46 -- -- -- -- -- -0.044 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 200.79 temperature 25.0 270 > th dose independent rect. 14 5
3 202.38 temperature 10.0 90 > th dose dependent rect. 6 9
4 202.75 temperature 25.0 270 > th dose independent rect. 15 2
7 203.06 radiation 1.0 270 > th dose independent rect. 15 2
9 203.26 radiation 1.0 270 > th dose independent rect. 14 4
11 203.39 radiation 1.0 270 > th dose independent rect. 14 15
22 203.63 temperature 10.0 10 > th dose dependent rect. 6 10
24 204.14 radiation 1.0 270 > th dose independent sin 16 NA
26 204.43 atmosphere 995.0 270 > th dose independent rect. 14 15
33 204.87 temperature 25.0 270 < th dose independent rect. 1 8
39 205.23 temperature 25.0 90 < th dose independent rect. 3 8
51 205.40 precipitation 0.1 270 < th dose independent rect. 15 14
52 205.40 wind 9.0 270 < th dose dependent rect. 6 8
53 205.40 precipitation 0.1 270 < th dose dependent rect. 15 14
55 205.51 temperature 25.0 90 < th dose independent rect. 3 4
59 205.65 atmosphere 995.0 270 > th dose dependent rect. 15 2
66 205.77 wind 7.0 270 < th dose independent rect. 5 9
67 205.77 atmosphere 995.0 90 > th dose dependent rect. 15 4
70 205.94 temperature 20.0 90 > th dose independent rect. 6 9
73 206.02 temperature 25.0 90 < th dose independent rect. 3 6
84 206.10 temperature 25.0 270 < th dose independent rect. 1 4
86 206.18 atmosphere 995.0 90 > th dose independent rect. 3 16
89 206.22 temperature 25.0 10 > th dose dependent rect. 16 10
92 206.26 radiation 40.0 270 < th dose independent rect. 14 15
94 206.27 temperature 25.0 10 > th dose dependent rect. 16 14
98 206.36 atmosphere 995.0 270 > th dose dependent rect. 13 6
99 206.43 radiation 30.0 14400 < th dose independent rect. 17 3
109 206.80 temperature 10.0 90 > th dose dependent rect. 19 20
119 206.90 atmosphere 1000.0 90 > th dose independent rect. 15 4
133 207.19 radiation 30.0 14400 < th dose independent rect. 17 5
140 207.31 temperature 20.0 10 > th dose independent rect. 6 10
160 207.72 temperature 25.0 10 > th dose independent rect. 16 4
162 207.73 atmosphere 995.0 270 > th dose independent rect. 5 9
163 207.73 atmosphere 1015.0 270 < th dose independent rect. 5 9
165 207.73 temperature 10.0 270 > th dose independent rect. 14 15
167 207.75 humidity 70.0 14400 > th dose independent rect. 22 5
169 207.75 precipitation 0.1 90 < th dose independent rect. 3 16
170 207.75 precipitation 0.1 90 < th dose dependent rect. 3 16
185 207.82 precipitation 0.1 270 < th dose independent rect. 5 9
193 207.82 precipitation 0.1 270 < th dose dependent rect. 5 9
202 207.90 humidity 50.0 90 > th dose dependent rect. 19 8
206 207.96 atmosphere 995.0 10 > th dose independent rect. 16 14
210 207.98 temperature 20.0 90 > th dose dependent rect. 15 4
212 208.01 temperature 20.0 10 > th dose dependent rect. 16 4
214 208.05 atmosphere 995.0 270 > th dose independent rect. 15 2
221 208.14 wind 9.0 270 < th dose independent rect. 14 15
224 208.18 atmosphere 1000.0 270 > th dose independent rect. 13 6
257 208.55 wind 9.0 10 < th dose independent rect. 6 10
261 208.61 precipitation 0.1 10 < th dose independent rect. 16 14
262 208.61 precipitation 0.1 10 < th dose dependent rect. 16 14
276 208.71 temperature 10.0 10 > th dose dependent rect. 21 19
281 208.81 temperature 15.0 90 > th dose independent rect. 19 8
292 208.92 humidity 80.0 720 < th dose dependent rect. 18 14
297 209.00 temperature 20.0 270 > th dose dependent rect. 15 2
311 209.08 radiation 1.0 270 < th dose dependent rect. 5 21
317 209.13 atmosphere 995.0 270 > th dose independent rect. 1 18
320 209.14 temperature 30.0 90 < th dose independent rect. 19 8
321 209.14 humidity 50.0 90 > th dose independent rect. 19 8
323 209.14 atmosphere 995.0 90 > th dose independent rect. 19 8
324 209.14 radiation 1.0 90 < th dose independent rect. 19 8
332 209.14 temperature 10.0 90 > th dose independent rect. 3 16
333 209.14 atmosphere 1015.0 90 < th dose independent rect. 3 16
334 209.14 radiation 1.0 90 < th dose dependent rect. 19 8
343 209.19 wind 9.0 90 < th dose independent rect. 19 8
356 209.25 wind 1.0 10 > th dose independent rect. 6 10
357 209.25 radiation 40.0 90 < th dose independent rect. 3 16
369 209.35 wind 9.0 270 < th dose independent rect. 17 22
380 209.39 humidity 80.0 270 < th dose independent rect. 15 2
381 209.39 humidity 80.0 720 < th dose dependent rect. 18 10
391 209.43 temperature 10.0 10 > th dose independent rect. 6 10
393 209.43 atmosphere 1015.0 10 < th dose independent rect. 6 10
394 209.43 temperature 10.0 10 > th dose independent rect. 16 14
395 209.43 radiation 40.0 10 < th dose independent rect. 16 14
400 209.45 radiation 20.0 10 < th dose independent rect. 16 14
404 209.47 precipitation 0.1 10 < th dose independent rect. 6 10
407 209.47 precipitation 0.1 10 < th dose dependent rect. 6 10
415 209.54 humidity 80.0 90 < th dose independent rect. 15 4
426 209.59 atmosphere 1000.0 270 > th dose independent rect. 11 8
427 209.59 wind 1.0 90 > th dose independent rect. 6 9
439 209.63 radiation 1.0 270 < th dose dependent rect. 11 14
441 209.64 humidity 70.0 720 > th dose independent rect. 19 8
463 209.80 wind 1.0 30 > th dose independent rect. 19 21
465 209.83 wind 9.0 90 < th dose independent rect. 19 20
475 209.89 radiation 30.0 90 < th dose independent rect. 15 4
480 209.92 radiation 40.0 90 < th dose dependent rect. 3 16
511 210.04 wind 9.0 10 < th dose independent rect. 16 14
535 210.19 atmosphere 995.0 10 > th dose dependent rect. 15 6
538 210.20 radiation 1.0 270 > th dose independent rect. 6 8
541 210.23 radiation 40.0 270 < th dose independent rect. 15 2
569 210.39 humidity 50.0 90 > th dose independent rect. 15 15
570 210.39 wind 9.0 90 < th dose independent rect. 3 16
585 210.43 humidity 50.0 90 > th dose independent rect. 15 4
594 210.47 precipitation 0.1 270 < th dose independent rect. 15 2
596 210.47 precipitation 0.1 270 < th dose dependent rect. 15 2
598 210.49 humidity 50.0 270 > th dose independent rect. 5 9
599 210.49 precipitation 0.1 270 < th dose independent rect. 1 18
601 210.49 precipitation 0.1 270 < th dose dependent rect. 1 18
603 210.50 wind 9.0 90 < th dose dependent rect. 19 8
605 210.51 atmosphere 1000.0 10 > th dose independent rect. 15 6
607 210.53 temperature 10.0 270 > th dose independent rect. 15 2
609 210.53 atmosphere 1010.0 270 < th dose independent rect. 15 2
611 210.53 temperature 10.0 270 > th dose independent rect. 17 22
623 210.58 wind 1.0 90 > th dose independent rect. 15 4
624 210.58 precipitation 0.1 90 < th dose independent rect. 19 8
625 210.58 precipitation 0.1 90 < th dose dependent rect. 19 8
646 210.69 wind 1.0 270 > th dose independent rect. 15 2
653 210.72 temperature 10.0 90 > th dose independent rect. 15 4
655 210.72 atmosphere 1010.0 90 < th dose independent rect. 15 4
657 210.72 temperature 10.0 90 > th dose independent rect. 19 20
658 210.72 humidity 50.0 90 > th dose independent rect. 19 20
676 210.79 radiation 1.0 270 > th dose dependent rect. 15 2
688 210.84 radiation 30.0 14400 < th dose independent rect. 17 13
700 210.87 temperature 30.0 90 < th dose dependent rect. 3 9
701 210.88 temperature 15.0 270 > th dose independent rect. 19 18
702 210.88 temperature 25.0 270 > th dose dependent sin 15 NA
706 210.89 wind 1.0 30 > th dose independent rect. 21 19
735 210.94 precipitation 0.1 90 < th dose independent rect. 15 4
737 210.94 precipitation 0.1 90 < th dose dependent rect. 15 4
739 210.94 radiation 40.0 270 < th dose dependent rect. 24 10
748 210.97 radiation 1.0 270 < th dose independent rect. 11 14
765 211.00 wind 1.0 270 > th dose independent rect. 4 10
786 211.05 wind 9.0 270 < th dose independent rect. 15 2
798 211.11 wind 1.0 270 > th dose independent rect. 14 14
813 211.17 atmosphere 995.0 10 > th dose independent rect. 3 18
817 211.19 atmosphere 995.0 90 > th dose independent rect. 19 20
823 211.23 radiation 1.0 270 > th dose dependent rect. 15 15
842 211.33 wind 9.0 270 < th dose independent rect. 19 18
848 211.36 humidity 90.0 90 < th dose independent rect. 6 9
858 211.38 radiation 40.0 90 < th dose dependent rect. 15 15
874 211.45 atmosphere 995.0 10 > th dose independent rect. 6 10
880 211.47 radiation 40.0 10 < th dose dependent rect. 16 14
883 211.48 wind 9.0 90 < th dose independent rect. 15 4
944 211.55 atmosphere 1015.0 90 < th dose independent rect. 15 15
946 211.55 radiation 1.0 270 < th dose independent rect. 5 21
962 211.59 precipitation 0.1 90 < th dose independent rect. 19 20
964 211.59 precipitation 0.1 90 < th dose dependent rect. 19 20