Os06g0649800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA glycosylase family protein.
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Os06g0649800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA glycosylase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 249.93 | 0.743 | 6.94 | -4.75 | 1.19 | 2.2 | -1.59 | -1.64 | -1.28 | 8.7 | 25 | 1416 | -- | -- |
| 252.23 | 0.74 | 6.93 | -4.29 | 1.16 | 2.05 | -1.59 | -- | -1.24 | 8.74 | 24.88 | 1420 | -- | -- |
| 257.96 | 0.748 | 6.94 | -4.74 | 1.2 | 2.15 | -- | -1.53 | -1.24 | 8.59 | 25.3 | 1417 | -- | -- |
| 259.32 | 0.75 | 6.89 | -4.38 | 1.2 | 2.05 | -- | -- | -1.21 | 8.54 | 25.02 | 1417 | -- | -- |
| 339.27 | 0.858 | 6.95 | -4.64 | -- | 2.09 | -- | -1.11 | -1.2 | -- | 25.19 | 1426 | -- | -- |
| 425.04 | 0.967 | 6.82 | -3.58 | 1.19 | -- | -1.55 | -- | -0.904 | 8.16 | -- | -- | -- | -- |
| 432.01 | 0.973 | 6.82 | -3.63 | 1.2 | -- | -- | -- | -0.905 | 7.93 | -- | -- | -- | -- |
| 328.38 | 0.844 | 6.9 | -4.41 | -- | 2.15 | -- | -- | -1.09 | -- | 25.96 | 5746 | -- | -- |
| 714.79 | 1.25 | 6.68 | -- | 1.34 | 1.56 | -- | -- | -0.275 | 8.23 | 28.7 | 1740 | -- | -- |
| 510.26 | 1.06 | 6.85 | -3.62 | -- | -- | -- | -- | -0.889 | -- | -- | -- | -- | -- |
| 779.08 | 1.31 | 6.73 | -- | 1.18 | -- | -- | -- | -0.5 | 8.15 | -- | -- | -- | -- |
| 782.14 | 1.3 | 6.73 | -- | -- | 1.15 | -- | -- | -0.329 | -- | 29.14 | 5746 | -- | -- |
| 855.2 | 1.36 | 6.76 | -- | -- | -- | -- | -- | -0.488 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 246.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 15 | 247.91 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 50 | 248.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 19 |
| 59 | 248.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 135 | 249.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 164 | 249.98 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 176 | 250.08 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 204 | 250.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 316 | 253.12 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 323 | 253.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 324 | 253.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 334 | 253.65 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 339 | 253.73 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 354 | 254.04 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 357 | 254.12 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 365 | 254.25 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 374 | 254.36 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 375 | 254.36 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 394 | 254.50 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 402 | 254.69 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 433 | 254.80 | temperature | 25 | 14400 | > th | dose dependent | sin | 14 | NA |
| 464 | 255.29 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 465 | 255.32 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 466 | 255.34 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 481 | 255.36 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 522 | 255.97 | temperature | 30 | 14400 | < th | dose independent | sin | 13 | NA |
| 539 | 256.06 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 571 | 256.35 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 605 | 256.82 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 5 |
| 608 | 256.88 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 5 |
| 622 | 257.03 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 634 | 257.18 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 640 | 257.22 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 728 | 257.73 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 775 | 258.12 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 784 | 258.19 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 906 | 258.92 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 20 |