BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0649800 Os06g0649800|Os06g0649800
(407 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0649800 DNA glycosylase family protein 647 0.0
Os09g0420300 DNA glycosylase family protein 259 2e-69
Os03g0198900 DNA glycosylase family protein 217 1e-56
Os08g0489300 DNA glycosylase family protein 183 2e-46
Os01g0799500 DNA glycosylase family protein 171 1e-42
>Os06g0649800 DNA glycosylase family protein
Length = 407
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/407 (81%), Positives = 331/407 (81%)
Query: 1 MAASMAGAPRVRSLNVAETDADARPVLVPGGNKARSGPAAARKPSPKPLRKADTAARTXX 60
MAASMAGAPRVRSLNVAETDADARPVLVPGGNKARSGPAAARKPSPKPLRKADTAART
Sbjct: 1 MAASMAGAPRVRSLNVAETDADARPVLVPGGNKARSGPAAARKPSPKPLRKADTAARTPE 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXVGKGXXXXXXXXXXXXXXXXXXKAAHDAPVHLNL 120
VGKG KAAHDAPVHLNL
Sbjct: 61 KPAAAAAAAAPPAKEEEGAKKNAGGGVGKGSSPLPSPRRAQPQPPPARKAAHDAPVHLNL 120
Query: 121 SLNASCSSDASVESLRGRDSSGGRLERSWSRVAPAVPRRGXXXXXXXXXXXXXXXXXXXX 180
SLNASCSSDASVESLRGRDSSGGRLERSWSRVAPAVPRRG
Sbjct: 121 SLNASCSSDASVESLRGRDSSGGRLERSWSRVAPAVPRRGKTPVKAAAAAAAAEKVAADA 180
Query: 181 XXXXXXXXXXGKRRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWP 240
GKRRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWP
Sbjct: 181 EVVAPATPEAGKRRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWP 240
Query: 241 EILKRRQLFREIFVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVD 300
EILKRRQLFREIFVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVD
Sbjct: 241 EILKRRQLFREIFVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVD 300
Query: 301 EFGSFDRYCWGFLNHKPIVSKFRYPRQVPVKSPKADMISKDMAAGLTNDHLVSCFRFKEC 360
EFGSFDRYCWGFLNHKPIVSKFRYPRQVPVKSPKADMISKDMAAGLTNDHLVSCFRFKEC
Sbjct: 301 EFGSFDRYCWGFLNHKPIVSKFRYPRQVPVKSPKADMISKDMAAGLTNDHLVSCFRFKEC 360
Query: 361 NEAPTLCTSDTSNANSEADLSADELRTKICSKEMAAKAELLRTIGHI 407
NEAPTLCTSDTSNANSEADLSADELRTKICSKEMAAKAELLRTIGHI
Sbjct: 361 NEAPTLCTSDTSNANSEADLSADELRTKICSKEMAAKAELLRTIGHI 407
>Os09g0420300 DNA glycosylase family protein
Length = 411
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 150/199 (75%), Gaps = 22/199 (11%)
Query: 191 GKRRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWPEILKRRQLFR 250
G RC WVTP +DPCY FHD EWGVPVHDD++LFE+LVLSGALAE+TWP IL +R+ F+
Sbjct: 167 GPPRCPWVTPNTDPCYAAFHDHEWGVPVHDDKKLFEMLVLSGALAEMTWPAILSKRETFK 226
Query: 251 EIFVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVDEFGSFDRYCW 310
E+F+DFDP+ ++K++E+K++ P S A SLLSE +LR ++ENA+++LK+++EFGSFD YCW
Sbjct: 227 EVFMDFDPLLVAKLSERKILGPCSPARSLLSEHRLRIIIENAQEVLKVIEEFGSFDNYCW 286
Query: 311 GFLNHKPIVSKFRYPRQVPVKSPKADMISKDM------------------AAGLTNDHLV 352
GFLN KP+V +FR+PR+VP+K+PKAD +S+D+ A G+ NDHLV
Sbjct: 287 GFLNSKPMVGRFRHPREVPMKTPKADAMSQDLLRRGFLGVGPTVIYAFMQAVGMANDHLV 346
Query: 353 SCFRFKECNEAPTLCTSDT 371
+C+RF EC C+S T
Sbjct: 347 TCYRFGECCS----CSSST 361
>Os03g0198900 DNA glycosylase family protein
Length = 417
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 132/191 (69%), Gaps = 19/191 (9%)
Query: 191 GKRRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWPEILKRRQLFR 250
GK RC+W+T S+P YV FHDEEWGVPVHDD++LFELL LS ALAE+TWP IL +R FR
Sbjct: 196 GKTRCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFR 255
Query: 251 EIFVDFDPVAISKINEKKL-VAPGSVANSLLSEQKLRAVVENARQILKIVDEFGSFDRYC 309
E+F F+ ++S+ +KK+ + S N LLSEQK+RAVV NA+Q+ K++ +FGSF YC
Sbjct: 256 EMFDGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSNYC 315
Query: 310 WGFLNHKPIVSKFRYPRQVPVKSPKADMISKDM------------------AAGLTNDHL 351
W F+ HKP+ S FRY RQVP+K+PK++ ISK + +G+ NDHL
Sbjct: 316 WSFVKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVNDHL 375
Query: 352 VSCFRFKECNE 362
CFRF++C +
Sbjct: 376 SCCFRFQDCRD 386
>Os08g0489300 DNA glycosylase family protein
Length = 339
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 117/186 (62%), Gaps = 18/186 (9%)
Query: 193 RRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWPEILKRRQLFREI 252
RC+W+T SD YV FHDE WGVPV++D RLFELL LSG L + W EILKRR ++RE
Sbjct: 139 HRCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGMLIDHNWTEILKRRDMYREA 198
Query: 253 FVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVDEFGSFDRYCWGF 312
F DFDP ++K++E + L+E ++R ++ENA+ I K+ EFGSF Y WG
Sbjct: 199 FADFDPSTVAKMDENDVAEISGNKELKLAECRVRCIIENAKCIQKVAKEFGSFSGYIWGH 258
Query: 313 LNHKPIVSKFRYPRQVPVKSPKADMISKDM------------------AAGLTNDHLVSC 354
+NH+P V ++++ + +P ++PK++ +SKD+ A+G+ DHLV C
Sbjct: 259 VNHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVIVYSFMQASGIVIDHLVDC 318
Query: 355 FRFKEC 360
FRF EC
Sbjct: 319 FRFPEC 324
>Os01g0799500 DNA glycosylase family protein
Length = 391
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 116/190 (61%), Gaps = 20/190 (10%)
Query: 192 KRRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWPEILKRRQLFRE 251
++RC+++TP SDP YV +HDEEWGVPV DD LFE+L LSG W ILKRR ++RE
Sbjct: 202 EKRCSFITPYSDPLYVAYHDEEWGVPVRDDELLFEMLTLSGVQVGADWTSILKRRHVYRE 261
Query: 252 IFVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVDEFGSFDRYCWG 311
F F+ A++K EK++ + A L +R V NA +I ++ +FGSF +Y W
Sbjct: 262 AFSGFNVDAVAKYTEKQMASLS--AEFGLDLGTIRGAVNNACRISEVRRDFGSFSKYVWA 319
Query: 312 FLNHKPIVSKFRYPRQVPVKSPKADMISKDM------------------AAGLTNDHLVS 353
F+N+KP+ ++Y R++PVK+ K++ ISKDM A GLTNDHLVS
Sbjct: 320 FVNNKPLSPSYKYSRKIPVKTSKSESISKDMVRRGFRFVGPTVIHSFMQAVGLTNDHLVS 379
Query: 354 CFRFKECNEA 363
C R + C+ +
Sbjct: 380 CPRHRVCSSS 389
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,628,085
Number of extensions: 431322
Number of successful extensions: 1720
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1712
Number of HSP's successfully gapped: 5
Length of query: 407
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 304
Effective length of database: 11,657,759
Effective search space: 3543958736
Effective search space used: 3543958736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)